Hb_027428_030

Information

Type -
Description -
Location Contig27428: 4741-6586
Sequence    

Annotation

kegg
ID cic:CICLE_v10007058mg
description hypothetical protein
nr
ID CDO96825.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9FL28
description LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1
trembl
ID A0A068TKK9
description Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00013972001 PE=4 SV=1
Gene Ontology
ID GO:0005515
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28725: 5088-5528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027428_030 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000173_480 0.198864507 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
3 Hb_000567_040 0.2167827922 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
4 Hb_002417_060 0.2177861438 - - Cell division cycle protein, putative [Ricinus communis]
5 Hb_020730_010 0.2215504788 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
6 Hb_002626_040 0.2257096702 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
7 Hb_010795_060 0.227048811 - - -
8 Hb_002505_040 0.2288712685 - - -
9 Hb_156593_050 0.2304172174 - - PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
10 Hb_001541_270 0.2318884833 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
11 Hb_006501_060 0.2326273296 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
12 Hb_001660_090 0.2327553663 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
13 Hb_000627_100 0.2339891226 - - -
14 Hb_026437_010 0.2346228471 - - -
15 Hb_000670_030 0.2348864338 - - -
16 Hb_001414_140 0.2353317445 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
17 Hb_008983_010 0.2364678342 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
18 Hb_000449_050 0.236526972 - - Protein bem46, putative [Ricinus communis]
19 Hb_000218_010 0.2385998948 - - -
20 Hb_000116_230 0.2457022526 - - -

Gene co-expression network

sample Hb_027428_030 Hb_027428_030 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_000567_040 Hb_000567_040 Hb_027428_030--Hb_000567_040 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_001541_270 Hb_001541_270 Hb_000173_480--Hb_001541_270 Hb_000173_480--Hb_002626_040 Hb_146464_010 Hb_146464_010 Hb_000173_480--Hb_146464_010 Hb_006316_070 Hb_006316_070 Hb_000173_480--Hb_006316_070 Hb_000798_060 Hb_000798_060 Hb_000173_480--Hb_000798_060 Hb_004032_270 Hb_004032_270 Hb_000173_480--Hb_004032_270 Hb_000627_100 Hb_000627_100 Hb_000567_040--Hb_000627_100 Hb_001860_010 Hb_001860_010 Hb_000567_040--Hb_001860_010 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_006501_060 Hb_006501_060 Hb_002417_060--Hb_006501_060 Hb_001660_090 Hb_001660_090 Hb_002417_060--Hb_001660_090 Hb_003398_010 Hb_003398_010 Hb_002417_060--Hb_003398_010 Hb_026437_010 Hb_026437_010 Hb_002417_060--Hb_026437_010 Hb_001301_190 Hb_001301_190 Hb_002417_060--Hb_001301_190 Hb_002843_100 Hb_002843_100 Hb_020730_010--Hb_002843_100 Hb_036227_010 Hb_036227_010 Hb_020730_010--Hb_036227_010 Hb_179511_010 Hb_179511_010 Hb_020730_010--Hb_179511_010 Hb_000482_110 Hb_000482_110 Hb_020730_010--Hb_000482_110 Hb_002141_020 Hb_002141_020 Hb_020730_010--Hb_002141_020 Hb_001754_170 Hb_001754_170 Hb_020730_010--Hb_001754_170 Hb_003906_190 Hb_003906_190 Hb_002626_040--Hb_003906_190 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002477_150 Hb_002477_150 Hb_002626_040--Hb_002477_150 Hb_002626_040--Hb_006316_070 Hb_011465_030 Hb_011465_030 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_156593_050 Hb_156593_050 Hb_010795_060--Hb_156593_050 Hb_036790_130 Hb_036790_130 Hb_010795_060--Hb_036790_130 Hb_094022_010 Hb_094022_010 Hb_010795_060--Hb_094022_010 Hb_000661_160 Hb_000661_160 Hb_010795_060--Hb_000661_160 Hb_000261_110 Hb_000261_110 Hb_010795_060--Hb_000261_110 Hb_000211_110 Hb_000211_110 Hb_010795_060--Hb_000211_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14151 0.358517 0.0447049 0.0447369 0.297938 0.176406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.258912 0.169714 0 0.0544422 0

CAGE analysis