Hb_000627_100

Information

Type -
Description -
Location Contig627: 119283-120292
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein e1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51699: 118231-119397 , PASA_asmbl_51700: 119605-119818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_100 0.0 - - -
2 Hb_000567_040 0.2041555479 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
3 Hb_027428_030 0.2339891226 - - unnamed protein product [Coffea canephora]
4 Hb_000826_060 0.2419335566 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_018599_010 0.247024412 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
6 Hb_002232_280 0.2676927547 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
7 Hb_036227_010 0.2693431646 - - -
8 Hb_116195_010 0.2803768764 - - -
9 Hb_000218_030 0.2813952831 - - -
10 Hb_000710_010 0.2828157661 - - PREDICTED: uncharacterized protein LOC105630356 [Jatropha curcas]
11 Hb_001195_570 0.2830871462 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
12 Hb_107281_010 0.2843175744 - - protein with unknown function [Ricinus communis]
13 Hb_000390_220 0.2844556767 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
14 Hb_020730_010 0.2886159592 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
15 Hb_000152_230 0.289374909 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
16 Hb_148891_010 0.290870028 - - -
17 Hb_000504_170 0.29167528 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
18 Hb_001414_140 0.2938174379 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]
19 Hb_006949_020 0.2946347318 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
20 Hb_010913_010 0.2948171076 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_000627_100 Hb_000627_100 Hb_000567_040 Hb_000567_040 Hb_000627_100--Hb_000567_040 Hb_027428_030 Hb_027428_030 Hb_000627_100--Hb_027428_030 Hb_000826_060 Hb_000826_060 Hb_000627_100--Hb_000826_060 Hb_018599_010 Hb_018599_010 Hb_000627_100--Hb_018599_010 Hb_002232_280 Hb_002232_280 Hb_000627_100--Hb_002232_280 Hb_036227_010 Hb_036227_010 Hb_000627_100--Hb_036227_010 Hb_000567_040--Hb_027428_030 Hb_001860_010 Hb_001860_010 Hb_000567_040--Hb_001860_010 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_000826_060--Hb_002232_280 Hb_089140_010 Hb_089140_010 Hb_000826_060--Hb_089140_010 Hb_008096_040 Hb_008096_040 Hb_000826_060--Hb_008096_040 Hb_079733_010 Hb_079733_010 Hb_000826_060--Hb_079733_010 Hb_001277_190 Hb_001277_190 Hb_000826_060--Hb_001277_190 Hb_000710_010 Hb_000710_010 Hb_018599_010--Hb_000710_010 Hb_031403_020 Hb_031403_020 Hb_018599_010--Hb_031403_020 Hb_007778_020 Hb_007778_020 Hb_018599_010--Hb_007778_020 Hb_014720_170 Hb_014720_170 Hb_018599_010--Hb_014720_170 Hb_001427_050 Hb_001427_050 Hb_018599_010--Hb_001427_050 Hb_002374_280 Hb_002374_280 Hb_018599_010--Hb_002374_280 Hb_000390_220 Hb_000390_220 Hb_002232_280--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_002232_280--Hb_001662_030 Hb_156144_030 Hb_156144_030 Hb_002232_280--Hb_156144_030 Hb_002232_280--Hb_014720_170 Hb_075449_020 Hb_075449_020 Hb_002232_280--Hb_075449_020 Hb_000904_130 Hb_000904_130 Hb_002232_280--Hb_000904_130 Hb_000504_170 Hb_000504_170 Hb_036227_010--Hb_000504_170 Hb_036227_010--Hb_007778_020 Hb_107847_010 Hb_107847_010 Hb_036227_010--Hb_107847_010 Hb_000258_320 Hb_000258_320 Hb_036227_010--Hb_000258_320 Hb_036227_010--Hb_020730_010 Hb_036227_010--Hb_014720_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29305 5.47965 2.2306 0.305879 4.41366 0.349301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28737 3.09856 0 0.435134 0

CAGE analysis