Hb_002417_060

Information

Type -
Description -
Location Contig2417: 43698-45401
Sequence    

Annotation

kegg
ID rcu:RCOM_0884430
description Cell division cycle protein, putative
nr
ID XP_002522614.1
description Cell division cycle protein, putative [Ricinus communis]
swissprot
ID Q5BKN5
description Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1
trembl
ID B9S9E5
description Cell division cycle protein, putative OS=Ricinus communis GN=RCOM_0884430 PE=4 SV=1
Gene Ontology
ID GO:0006950
description cell division cycle protein 123 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002417_060 0.0 - - Cell division cycle protein, putative [Ricinus communis]
2 Hb_006501_060 0.2130085774 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
3 Hb_027428_030 0.2177861438 - - unnamed protein product [Coffea canephora]
4 Hb_001660_090 0.2182779343 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
5 Hb_003398_010 0.2272876669 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
6 Hb_026437_010 0.2326741155 - - -
7 Hb_001301_190 0.2334106913 - - -
8 Hb_005228_100 0.2362597285 - - -
9 Hb_182807_020 0.2419019176 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_001247_230 0.2459370803 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002168_020 0.2465813854 - - ATP binding protein, putative [Ricinus communis]
12 Hb_003688_200 0.2507668652 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002374_440 0.251082662 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000753_210 0.2528109839 - - l-asparaginase, putative [Ricinus communis]
15 Hb_000739_290 0.2534023825 - - cytochrome P450, putative [Ricinus communis]
16 Hb_029388_040 0.2539114829 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
17 Hb_003299_080 0.2543332247 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
18 Hb_000206_130 0.2554358171 - - unnamed protein product [Vitis vinifera]
19 Hb_012340_020 0.2555929339 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
20 Hb_001414_140 0.2572945822 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Populus euphratica]

Gene co-expression network

sample Hb_002417_060 Hb_002417_060 Hb_006501_060 Hb_006501_060 Hb_002417_060--Hb_006501_060 Hb_027428_030 Hb_027428_030 Hb_002417_060--Hb_027428_030 Hb_001660_090 Hb_001660_090 Hb_002417_060--Hb_001660_090 Hb_003398_010 Hb_003398_010 Hb_002417_060--Hb_003398_010 Hb_026437_010 Hb_026437_010 Hb_002417_060--Hb_026437_010 Hb_001301_190 Hb_001301_190 Hb_002417_060--Hb_001301_190 Hb_000120_570 Hb_000120_570 Hb_006501_060--Hb_000120_570 Hb_002609_010 Hb_002609_010 Hb_006501_060--Hb_002609_010 Hb_001247_230 Hb_001247_230 Hb_006501_060--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_006501_060--Hb_010883_080 Hb_001534_070 Hb_001534_070 Hb_006501_060--Hb_001534_070 Hb_000116_570 Hb_000116_570 Hb_006501_060--Hb_000116_570 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_000567_040 Hb_000567_040 Hb_027428_030--Hb_000567_040 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_001053_030 Hb_001053_030 Hb_001660_090--Hb_001053_030 Hb_002609_090 Hb_002609_090 Hb_001660_090--Hb_002609_090 Hb_001638_040 Hb_001638_040 Hb_001660_090--Hb_001638_040 Hb_003633_140 Hb_003633_140 Hb_001660_090--Hb_003633_140 Hb_003849_260 Hb_003849_260 Hb_001660_090--Hb_003849_260 Hb_000836_120 Hb_000836_120 Hb_001660_090--Hb_000836_120 Hb_041237_010 Hb_041237_010 Hb_003398_010--Hb_041237_010 Hb_000617_040 Hb_000617_040 Hb_003398_010--Hb_000617_040 Hb_004631_160 Hb_004631_160 Hb_003398_010--Hb_004631_160 Hb_003299_080 Hb_003299_080 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_031089_030 Hb_031089_030 Hb_003398_010--Hb_031089_030 Hb_000260_090 Hb_000260_090 Hb_026437_010--Hb_000260_090 Hb_026437_010--Hb_031089_030 Hb_004096_080 Hb_004096_080 Hb_026437_010--Hb_004096_080 Hb_084429_010 Hb_084429_010 Hb_026437_010--Hb_084429_010 Hb_006588_090 Hb_006588_090 Hb_026437_010--Hb_006588_090 Hb_026437_010--Hb_002609_010 Hb_009355_030 Hb_009355_030 Hb_001301_190--Hb_009355_030 Hb_000753_210 Hb_000753_210 Hb_001301_190--Hb_000753_210 Hb_001301_190--Hb_003299_080 Hb_183510_010 Hb_183510_010 Hb_001301_190--Hb_183510_010 Hb_001301_190--Hb_001247_230 Hb_000050_090 Hb_000050_090 Hb_001301_190--Hb_000050_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125115 0.310776 0.0188994 0 0.443198 0.215912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109244 0.0859146 0 0.0519041 0

CAGE analysis