Hb_000260_090

Information

Type -
Description -
Location Contig260: 62419-66865
Sequence    

Annotation

kegg
ID cam:101504767
description ubiquitin-conjugating enzyme E2 28-like
nr
ID XP_012481328.1
description PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
swissprot
ID Q94F47
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
trembl
ID A0A0D2RDA1
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G003200 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-conjugating enzyme e2-17 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26943: 62435-66822
cDNA
(Sanger)
(ID:Location)		 002_G07.ab1: 62799-66783 , 013_O20.ab1: 62649-66784 , 025_A10.ab1: 62574-66783 , 028_B04.ab1: 62778-66819 , 035_F19.ab1: 62603-66784 , 041_I06.ab1: 62755-66783 , 042_L03.ab1: 62592-66784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_090 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
2 Hb_000174_200 0.1068319311 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
3 Hb_012395_160 0.1259482589 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
4 Hb_006316_070 0.1318609422 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_000347_150 0.1366137621 - - Nucleolysin TIAR [Morus notabilis]
6 Hb_003299_090 0.1368167685 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
7 Hb_001584_170 0.1401720561 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_006740_020 0.1447452596 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
9 Hb_000270_020 0.1449972277 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
10 Hb_148209_020 0.1451038251 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
11 Hb_000172_550 0.1472143019 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
12 Hb_000076_290 0.148291862 - - translation factor sui1, putative [Ricinus communis]
13 Hb_005399_020 0.1487258277 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
14 Hb_026437_010 0.1504107697 - - -
15 Hb_006588_090 0.1523072735 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
16 Hb_002235_360 0.1528922839 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
17 Hb_002270_010 0.1538806221 - - Chaperone protein dnaJ, putative [Ricinus communis]
18 Hb_015401_020 0.154217889 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_000920_040 0.1543003324 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
20 Hb_002626_040 0.1545313337 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_090 Hb_000260_090 Hb_000174_200 Hb_000174_200 Hb_000260_090--Hb_000174_200 Hb_012395_160 Hb_012395_160 Hb_000260_090--Hb_012395_160 Hb_006316_070 Hb_006316_070 Hb_000260_090--Hb_006316_070 Hb_000347_150 Hb_000347_150 Hb_000260_090--Hb_000347_150 Hb_003299_090 Hb_003299_090 Hb_000260_090--Hb_003299_090 Hb_001584_170 Hb_001584_170 Hb_000260_090--Hb_001584_170 Hb_000076_290 Hb_000076_290 Hb_000174_200--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_005399_020 Hb_005399_020 Hb_012395_160--Hb_005399_020 Hb_148209_020 Hb_148209_020 Hb_012395_160--Hb_148209_020 Hb_012395_160--Hb_001584_170 Hb_005038_020 Hb_005038_020 Hb_012395_160--Hb_005038_020 Hb_012395_160--Hb_006316_070 Hb_000116_280 Hb_000116_280 Hb_012395_160--Hb_000116_280 Hb_002849_080 Hb_002849_080 Hb_006316_070--Hb_002849_080 Hb_002977_010 Hb_002977_010 Hb_006316_070--Hb_002977_010 Hb_006316_070--Hb_148209_020 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_006316_070--Hb_002477_150 Hb_006316_070--Hb_001584_170 Hb_000270_020 Hb_000270_020 Hb_000347_150--Hb_000270_020 Hb_000347_150--Hb_003299_090 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000035_120 Hb_000035_120 Hb_000347_150--Hb_000035_120 Hb_005914_090 Hb_005914_090 Hb_000347_150--Hb_005914_090 Hb_001307_140 Hb_001307_140 Hb_000347_150--Hb_001307_140 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_005914_090 Hb_003299_090--Hb_001307_140 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_003878_140 Hb_003878_140 Hb_001584_170--Hb_003878_140 Hb_000865_080 Hb_000865_080 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_000224_060 Hb_000224_060 Hb_001584_170--Hb_000224_060 Hb_001584_170--Hb_002977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1090.83 1255.64 76.8494 147.302 924.624 1912.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
799.535 357.071 339.194 254.586 70.2344

CAGE analysis