Hb_009355_030

Information

Type -
Description -
Location Contig9355: 15052-16659
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_002513763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3E6P4
description F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1
trembl
ID B9RJ44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62992: 14076-14382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009355_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_183510_010 0.1110578122 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
3 Hb_006588_090 0.1354803843 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
4 Hb_001247_230 0.1437514797 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000174_200 0.1499170045 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
6 Hb_000116_570 0.1504281931 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
7 Hb_002002_020 0.1511939195 - - Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
8 Hb_001301_190 0.1533904371 - - -
9 Hb_000465_310 0.1571161409 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005038_020 0.1578542007 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_005565_010 0.1578599977 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
12 Hb_153150_010 0.1605345562 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
13 Hb_000640_210 0.1642311114 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
14 Hb_001178_060 0.1648148408 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
15 Hb_005333_020 0.1650394353 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
16 Hb_000016_280 0.1651556925 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
17 Hb_002849_080 0.1659089462 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
18 Hb_000322_170 0.1662415326 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
19 Hb_000093_130 0.1712414574 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_002783_050 0.171565789 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009355_030 Hb_009355_030 Hb_183510_010 Hb_183510_010 Hb_009355_030--Hb_183510_010 Hb_006588_090 Hb_006588_090 Hb_009355_030--Hb_006588_090 Hb_001247_230 Hb_001247_230 Hb_009355_030--Hb_001247_230 Hb_000174_200 Hb_000174_200 Hb_009355_030--Hb_000174_200 Hb_000116_570 Hb_000116_570 Hb_009355_030--Hb_000116_570 Hb_002002_020 Hb_002002_020 Hb_009355_030--Hb_002002_020 Hb_183510_010--Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_183510_010--Hb_000076_290 Hb_001178_060 Hb_001178_060 Hb_183510_010--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_183510_010--Hb_000322_170 Hb_183510_010--Hb_002002_020 Hb_005038_020 Hb_005038_020 Hb_183510_010--Hb_005038_020 Hb_000465_310 Hb_000465_310 Hb_006588_090--Hb_000465_310 Hb_005333_020 Hb_005333_020 Hb_006588_090--Hb_005333_020 Hb_006588_090--Hb_183510_010 Hb_007416_200 Hb_007416_200 Hb_006588_090--Hb_007416_200 Hb_001720_010 Hb_001720_010 Hb_006588_090--Hb_001720_010 Hb_025048_030 Hb_025048_030 Hb_006588_090--Hb_025048_030 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_002849_080 Hb_002849_080 Hb_001247_230--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001247_230--Hb_148209_020 Hb_000265_250 Hb_000265_250 Hb_001247_230--Hb_000265_250 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_001247_230--Hb_000116_570 Hb_000174_200--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_000174_200--Hb_000640_210 Hb_004032_350 Hb_004032_350 Hb_000174_200--Hb_004032_350 Hb_015401_020 Hb_015401_020 Hb_000174_200--Hb_015401_020 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_002002_020--Hb_000322_170 Hb_002002_020--Hb_015401_020 Hb_002843_100 Hb_002843_100 Hb_002002_020--Hb_002843_100 Hb_002002_020--Hb_001178_060 Hb_002002_020--Hb_000174_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.8319 64.6291 4.39352 3.97081 53.2384 46.11
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1204 14.1391 9.78562 3.98843 0.345172

CAGE analysis