Hb_002002_020

Information

Type -
Description -
Location Contig2002: 66935-68960
Sequence    

Annotation

kegg
ID tcc:TCM_025286
description Phosphoprotein phosphatase isoform 1
nr
ID XP_007029425.1
description Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EZR5
description Phosphoprotein phosphatase isoform 3 OS=Theobroma cacao GN=TCM_025286 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nb-arc domain-containing disease resistance isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20271: 68346-69339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002002_020 0.0 - - Phosphoprotein phosphatase isoform 3 [Theobroma cacao]
2 Hb_183510_010 0.1052093007 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
3 Hb_000322_170 0.128694914 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
4 Hb_015401_020 0.1319844394 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_002843_100 0.1325055354 - - -
6 Hb_001178_060 0.1337260453 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
7 Hb_000174_200 0.1369267457 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
8 Hb_000076_290 0.1370502496 - - translation factor sui1, putative [Ricinus communis]
9 Hb_000173_380 0.1395344848 transcription factor TF Family: FAR1 -
10 Hb_000077_080 0.1442552876 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
11 Hb_001633_100 0.1459951605 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
12 Hb_000172_550 0.1509386548 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
13 Hb_009355_030 0.1511939195 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005016_030 0.1523804753 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
15 Hb_005038_020 0.1539682828 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_153150_010 0.1544364083 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
17 Hb_001975_070 0.1546550011 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
18 Hb_000186_040 0.1556358376 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000640_210 0.1559656273 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
20 Hb_002078_420 0.1563259846 - - PREDICTED: F-box only protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002002_020 Hb_002002_020 Hb_183510_010 Hb_183510_010 Hb_002002_020--Hb_183510_010 Hb_000322_170 Hb_000322_170 Hb_002002_020--Hb_000322_170 Hb_015401_020 Hb_015401_020 Hb_002002_020--Hb_015401_020 Hb_002843_100 Hb_002843_100 Hb_002002_020--Hb_002843_100 Hb_001178_060 Hb_001178_060 Hb_002002_020--Hb_001178_060 Hb_000174_200 Hb_000174_200 Hb_002002_020--Hb_000174_200 Hb_183510_010--Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_183510_010--Hb_000076_290 Hb_183510_010--Hb_001178_060 Hb_183510_010--Hb_000322_170 Hb_005038_020 Hb_005038_020 Hb_183510_010--Hb_005038_020 Hb_000322_170--Hb_001178_060 Hb_000640_210 Hb_000640_210 Hb_000322_170--Hb_000640_210 Hb_005016_030 Hb_005016_030 Hb_000322_170--Hb_005016_030 Hb_004032_350 Hb_004032_350 Hb_000322_170--Hb_004032_350 Hb_000322_170--Hb_000076_290 Hb_000322_170--Hb_000174_200 Hb_015401_020--Hb_000076_290 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_001439_180 Hb_001439_180 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_002270_010 Hb_002270_010 Hb_015401_020--Hb_002270_010 Hb_001633_100 Hb_001633_100 Hb_002843_100--Hb_001633_100 Hb_001754_170 Hb_001754_170 Hb_002843_100--Hb_001754_170 Hb_002400_390 Hb_002400_390 Hb_002843_100--Hb_002400_390 Hb_002405_020 Hb_002405_020 Hb_002843_100--Hb_002405_020 Hb_003581_110 Hb_003581_110 Hb_002843_100--Hb_003581_110 Hb_001178_060--Hb_005016_030 Hb_001178_060--Hb_000640_210 Hb_060437_010 Hb_060437_010 Hb_001178_060--Hb_060437_010 Hb_001178_060--Hb_000076_290 Hb_002149_040 Hb_002149_040 Hb_001178_060--Hb_002149_040 Hb_000174_200--Hb_000076_290 Hb_000174_200--Hb_000640_210 Hb_000174_200--Hb_004032_350 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3493 8.06342 0.106049 1.9479 10.4343 9.49405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72997 4.2682 2.30448 1.9466 0

CAGE analysis