Hb_000173_480

Information

Type -
Description -
Location Contig173: 340764-347767
Sequence    

Annotation

kegg
ID rcu:RCOM_0678580
description structural constituent of ribosome, putative
nr
ID XP_012069475.1
description PREDICTED: calcium-binding protein 39 [Jatropha curcas]
swissprot
ID Q9Y376
description Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1
trembl
ID A0A067KV28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02069 PE=4 SV=1
Gene Ontology
ID GO:0005488
description calcium-binding protein 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16476: 341696-342055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_480 0.0 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
2 Hb_001541_270 0.1447103472 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
3 Hb_002626_040 0.1647688732 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
4 Hb_146464_010 0.1676801498 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_006316_070 0.1754647414 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_000798_060 0.1772043408 transcription factor TF Family: PHD -
7 Hb_004032_270 0.1790157965 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
8 Hb_173953_010 0.1805328336 - - hypothetical protein RCOM_1267370 [Ricinus communis]
9 Hb_010407_070 0.1807978946 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
10 Hb_001720_010 0.1811821946 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_002745_010 0.1814718807 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
12 Hb_029584_080 0.1834608286 - - serine acetyltransferase [Hevea brasiliensis]
13 Hb_002073_040 0.1844813137 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001220_030 0.1856311027 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
15 Hb_009355_030 0.1858448616 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001318_030 0.1872135071 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
17 Hb_000077_080 0.1874053864 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
18 Hb_001348_150 0.1883745238 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
19 Hb_000260_090 0.1883995324 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
20 Hb_005551_060 0.189071908 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_480 Hb_000173_480 Hb_001541_270 Hb_001541_270 Hb_000173_480--Hb_001541_270 Hb_002626_040 Hb_002626_040 Hb_000173_480--Hb_002626_040 Hb_146464_010 Hb_146464_010 Hb_000173_480--Hb_146464_010 Hb_006316_070 Hb_006316_070 Hb_000173_480--Hb_006316_070 Hb_000798_060 Hb_000798_060 Hb_000173_480--Hb_000798_060 Hb_004032_270 Hb_004032_270 Hb_000173_480--Hb_004032_270 Hb_009615_150 Hb_009615_150 Hb_001541_270--Hb_009615_150 Hb_022092_120 Hb_022092_120 Hb_001541_270--Hb_022092_120 Hb_005396_050 Hb_005396_050 Hb_001541_270--Hb_005396_050 Hb_001541_270--Hb_000798_060 Hb_173953_010 Hb_173953_010 Hb_001541_270--Hb_173953_010 Hb_002745_010 Hb_002745_010 Hb_001541_270--Hb_002745_010 Hb_003906_190 Hb_003906_190 Hb_002626_040--Hb_003906_190 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002477_150 Hb_002477_150 Hb_002626_040--Hb_002477_150 Hb_002626_040--Hb_006316_070 Hb_011465_030 Hb_011465_030 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_005551_060 Hb_005551_060 Hb_146464_010--Hb_005551_060 Hb_001348_150 Hb_001348_150 Hb_146464_010--Hb_001348_150 Hb_001247_120 Hb_001247_120 Hb_146464_010--Hb_001247_120 Hb_006582_020 Hb_006582_020 Hb_146464_010--Hb_006582_020 Hb_146464_010--Hb_004032_270 Hb_001610_110 Hb_001610_110 Hb_146464_010--Hb_001610_110 Hb_002849_080 Hb_002849_080 Hb_006316_070--Hb_002849_080 Hb_006316_070--Hb_002977_010 Hb_148209_020 Hb_148209_020 Hb_006316_070--Hb_148209_020 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_001584_170 Hb_001584_170 Hb_006316_070--Hb_001584_170 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_009838_050 Hb_009838_050 Hb_004032_270--Hb_009838_050 Hb_001318_030 Hb_001318_030 Hb_004032_270--Hb_001318_030 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_000567_210 Hb_000567_210 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0851 1.83593 0.0676877 0.145633 1.12445 1.06829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20966 0.978072 0.297237 0.147856 0.1103

CAGE analysis