Hb_006026_010

Information

Type -
Description -
Location Contig6026: 21960-24637
Sequence    

Annotation

kegg
ID rcu:RCOM_1720410
description hypothetical protein
nr
ID XP_012085115.1
description PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
swissprot
ID Q9FKB5
description Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1
trembl
ID A0A067JUB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17551 PE=4 SV=1
Gene Ontology
ID GO:0044424
description cyclin-dependent kinase inhibitor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50616: 22584-24853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006026_010 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
2 Hb_003371_120 0.1497629218 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
3 Hb_000997_110 0.1770364954 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
4 Hb_000160_240 0.1804796865 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
5 Hb_002273_050 0.1871521807 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
6 Hb_000976_290 0.1891151873 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
7 Hb_000120_970 0.1916781023 - - PREDICTED: probable acyl-activating enzyme 2 isoform X2 [Jatropha curcas]
8 Hb_000787_190 0.1929383887 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 15-like [Jatropha curcas]
9 Hb_002273_080 0.1951816777 - - geranylgeranyl reductase [Monoraphidium neglectum]
10 Hb_020805_170 0.1989765756 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
11 Hb_000189_120 0.2005790188 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
12 Hb_000261_190 0.2008568359 - - PREDICTED: uncharacterized protein At4g04980-like [Jatropha curcas]
13 Hb_005147_040 0.2033620213 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
14 Hb_003299_010 0.2039601774 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_002686_280 0.205403622 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_005307_040 0.2059626113 - - gulonolactone oxidase, putative [Ricinus communis]
17 Hb_003504_040 0.2089850687 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
18 Hb_020178_060 0.2093463766 - - PREDICTED: nucleobase-ascorbate transporter 3 [Jatropha curcas]
19 Hb_004108_170 0.209772388 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000010_350 0.2105404903 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_006026_010 Hb_006026_010 Hb_003371_120 Hb_003371_120 Hb_006026_010--Hb_003371_120 Hb_000997_110 Hb_000997_110 Hb_006026_010--Hb_000997_110 Hb_000160_240 Hb_000160_240 Hb_006026_010--Hb_000160_240 Hb_002273_050 Hb_002273_050 Hb_006026_010--Hb_002273_050 Hb_000976_290 Hb_000976_290 Hb_006026_010--Hb_000976_290 Hb_000120_970 Hb_000120_970 Hb_006026_010--Hb_000120_970 Hb_003371_120--Hb_000997_110 Hb_089920_010 Hb_089920_010 Hb_003371_120--Hb_089920_010 Hb_005400_040 Hb_005400_040 Hb_003371_120--Hb_005400_040 Hb_000538_190 Hb_000538_190 Hb_003371_120--Hb_000538_190 Hb_020178_060 Hb_020178_060 Hb_003371_120--Hb_020178_060 Hb_000997_110--Hb_005400_040 Hb_000010_350 Hb_000010_350 Hb_000997_110--Hb_000010_350 Hb_005147_040 Hb_005147_040 Hb_000997_110--Hb_005147_040 Hb_000997_110--Hb_000976_290 Hb_002918_150 Hb_002918_150 Hb_000997_110--Hb_002918_150 Hb_000160_240--Hb_000976_290 Hb_002273_080 Hb_002273_080 Hb_000160_240--Hb_002273_080 Hb_002686_280 Hb_002686_280 Hb_000160_240--Hb_002686_280 Hb_000160_240--Hb_002273_050 Hb_020805_170 Hb_020805_170 Hb_000160_240--Hb_020805_170 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_001269_690 Hb_001269_690 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060 Hb_000062_080 Hb_000062_080 Hb_000976_290--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000976_290--Hb_127599_010 Hb_003494_060 Hb_003494_060 Hb_000976_290--Hb_003494_060 Hb_000976_290--Hb_000010_350 Hb_002026_060 Hb_002026_060 Hb_000976_290--Hb_002026_060 Hb_001141_360 Hb_001141_360 Hb_000976_290--Hb_001141_360 Hb_000107_560 Hb_000107_560 Hb_000120_970--Hb_000107_560 Hb_080451_010 Hb_080451_010 Hb_000120_970--Hb_080451_010 Hb_000521_170 Hb_000521_170 Hb_000120_970--Hb_000521_170 Hb_011828_030 Hb_011828_030 Hb_000120_970--Hb_011828_030 Hb_000120_970--Hb_020178_060 Hb_089100_040 Hb_089100_040 Hb_000120_970--Hb_089100_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20341 10.2736 0.44054 2.55481 2.2631 1.13481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.779113 1.79092 0.171836 5.36382 0.381644

CAGE analysis