Hb_005524_010

Information

Type -
Description -
Location Contig5524: 26825-31555
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005524_010 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_001798_040 0.1021495969 transcription factor TF Family: NAC hypothetical protein ARALYDRAFT_918808 [Arabidopsis lyrata subsp. lyrata]
3 Hb_000853_380 0.3236787791 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000457_040 0.3437411065 - - -
5 Hb_000487_390 0.3529954102 - - PREDICTED: putative pumilio homolog 21 [Jatropha curcas]
6 Hb_001263_020 0.3530341788 - - -
7 Hb_012656_010 0.35305285 - - -
8 Hb_003812_010 0.3533340482 - - -
9 Hb_001268_100 0.3552116237 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
10 Hb_107500_010 0.3556493909 - - -
11 Hb_010661_040 0.3559814118 - - hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
12 Hb_001754_220 0.3589145733 - - -
13 Hb_002014_110 0.3668245569 - - -
14 Hb_000866_160 0.3739648751 - - PREDICTED: elicitor-responsive protein 3 [Populus euphratica]
15 Hb_031089_060 0.3744524433 - - -
16 Hb_019654_160 0.3748053677 - - Zinc finger protein GIS2 [Medicago truncatula]
17 Hb_012799_090 0.375261765 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
18 Hb_004088_060 0.3818035457 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
19 Hb_002185_010 0.3825901716 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
20 Hb_000987_090 0.3877605386 - - hypothetical protein B456_002G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_005524_010 Hb_005524_010 Hb_001798_040 Hb_001798_040 Hb_005524_010--Hb_001798_040 Hb_000853_380 Hb_000853_380 Hb_005524_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_005524_010--Hb_000457_040 Hb_000487_390 Hb_000487_390 Hb_005524_010--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_005524_010--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_005524_010--Hb_012656_010 Hb_003812_010 Hb_003812_010 Hb_001798_040--Hb_003812_010 Hb_001798_040--Hb_012656_010 Hb_001798_040--Hb_001263_020 Hb_001798_040--Hb_000487_390 Hb_001754_220 Hb_001754_220 Hb_001798_040--Hb_001754_220 Hb_000853_380--Hb_000457_040 Hb_107500_010 Hb_107500_010 Hb_000853_380--Hb_107500_010 Hb_000853_380--Hb_001798_040 Hb_001268_100 Hb_001268_100 Hb_000853_380--Hb_001268_100 Hb_004724_350 Hb_004724_350 Hb_000853_380--Hb_004724_350 Hb_002185_010 Hb_002185_010 Hb_000457_040--Hb_002185_010 Hb_000457_040--Hb_107500_010 Hb_000457_040--Hb_001268_100 Hb_000326_020 Hb_000326_020 Hb_000457_040--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000457_040--Hb_032533_010 Hb_000487_390--Hb_001263_020 Hb_000487_390--Hb_012656_010 Hb_000487_390--Hb_003812_010 Hb_000487_390--Hb_001754_220 Hb_000866_160 Hb_000866_160 Hb_000487_390--Hb_000866_160 Hb_019654_160 Hb_019654_160 Hb_000487_390--Hb_019654_160 Hb_001263_020--Hb_012656_010 Hb_001263_020--Hb_003812_010 Hb_001263_020--Hb_001754_220 Hb_001263_020--Hb_019654_160 Hb_012799_090 Hb_012799_090 Hb_001263_020--Hb_012799_090 Hb_012656_010--Hb_003812_010 Hb_012656_010--Hb_001754_220 Hb_012656_010--Hb_019654_160 Hb_012656_010--Hb_012799_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00390501 0 0 0.00475377 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00846909 0 0 0

CAGE analysis