Hb_171062_010

Information

Type -
Description -
Location Contig171062: 718-2682
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36275g
description hypothetical protein
nr
ID CAN60203.1
description hypothetical protein VITISV_036059 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AGE5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036059 PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein VITISV_036059

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15981: 1265-1716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171062_010 0.0 - - hypothetical protein VITISV_036059 [Vitis vinifera]
2 Hb_003902_060 0.2365297987 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
3 Hb_025669_030 0.269748567 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
4 Hb_001623_310 0.2750704692 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
5 Hb_002447_160 0.3012532613 - - -
6 Hb_000045_280 0.307639982 - - hypothetical protein JCGZ_04076 [Jatropha curcas]
7 Hb_003768_060 0.3112302478 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
8 Hb_004522_020 0.3139596903 - - PREDICTED: uncharacterized protein LOC105646836 [Jatropha curcas]
9 Hb_006925_090 0.314427423 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
10 Hb_005679_080 0.3249786342 - - PREDICTED: PH-interacting protein-like [Populus euphratica]
11 Hb_007188_060 0.3319752861 - - -
12 Hb_059481_010 0.3333218017 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
13 Hb_000731_230 0.3344299379 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
14 Hb_003938_030 0.3445507414 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
15 Hb_078568_010 0.3475416926 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
16 Hb_011505_010 0.3475516952 - - -
17 Hb_005694_070 0.3519154106 - - kinase, putative [Ricinus communis]
18 Hb_001329_170 0.3553253393 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
19 Hb_040359_010 0.357094597 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_000696_020 0.3582914975 - - hypothetical protein JCGZ_25344 [Jatropha curcas]

Gene co-expression network

sample Hb_171062_010 Hb_171062_010 Hb_003902_060 Hb_003902_060 Hb_171062_010--Hb_003902_060 Hb_025669_030 Hb_025669_030 Hb_171062_010--Hb_025669_030 Hb_001623_310 Hb_001623_310 Hb_171062_010--Hb_001623_310 Hb_002447_160 Hb_002447_160 Hb_171062_010--Hb_002447_160 Hb_000045_280 Hb_000045_280 Hb_171062_010--Hb_000045_280 Hb_003768_060 Hb_003768_060 Hb_171062_010--Hb_003768_060 Hb_078568_010 Hb_078568_010 Hb_003902_060--Hb_078568_010 Hb_100105_010 Hb_100105_010 Hb_003902_060--Hb_100105_010 Hb_000731_230 Hb_000731_230 Hb_003902_060--Hb_000731_230 Hb_075230_010 Hb_075230_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_003902_060--Hb_000045_280 Hb_025669_030--Hb_001623_310 Hb_000392_460 Hb_000392_460 Hb_025669_030--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_025669_030--Hb_083822_010 Hb_021346_040 Hb_021346_040 Hb_025669_030--Hb_021346_040 Hb_000696_020 Hb_000696_020 Hb_025669_030--Hb_000696_020 Hb_001623_310--Hb_000392_460 Hb_001623_310--Hb_083822_010 Hb_001623_310--Hb_021346_040 Hb_059481_010 Hb_059481_010 Hb_001623_310--Hb_059481_010 Hb_002447_160--Hb_003768_060 Hb_001004_050 Hb_001004_050 Hb_002447_160--Hb_001004_050 Hb_002631_220 Hb_002631_220 Hb_002447_160--Hb_002631_220 Hb_002447_160--Hb_059481_010 Hb_000787_010 Hb_000787_010 Hb_002447_160--Hb_000787_010 Hb_004021_090 Hb_004021_090 Hb_002447_160--Hb_004021_090 Hb_089140_010 Hb_089140_010 Hb_000045_280--Hb_089140_010 Hb_000045_280--Hb_000731_230 Hb_006907_100 Hb_006907_100 Hb_000045_280--Hb_006907_100 Hb_001269_290 Hb_001269_290 Hb_000045_280--Hb_001269_290 Hb_158384_010 Hb_158384_010 Hb_000045_280--Hb_158384_010 Hb_003768_060--Hb_000787_010 Hb_028639_040 Hb_028639_040 Hb_003768_060--Hb_028639_040 Hb_003768_060--Hb_158384_010 Hb_003768_060--Hb_004021_090 Hb_099990_030 Hb_099990_030 Hb_003768_060--Hb_099990_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525795 0.0843395 0.131355 0.0164523 0 0.0229427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0757536 0 0 0

CAGE analysis