Hb_001195_430

Information

Type -
Description -
Location Contig1195: 254224-256431
Sequence    

Annotation

kegg
ID rcu:RCOM_1593960
description hypothetical protein
nr
ID XP_002510366.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7S4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593960 PE=4 SV=1
Gene Ontology
ID GO:0048868
description duf620 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_430 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011174_030 0.0933903349 - - -
3 Hb_011505_010 0.2757353218 - - -
4 Hb_010815_050 0.295697821 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
5 Hb_002435_020 0.3052512426 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_000069_580 0.3075399751 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002259_180 0.3110303402 - - -
8 Hb_008221_020 0.3120995962 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
9 Hb_006355_120 0.3148172414 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001410_050 0.3160224929 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_001246_050 0.3535886636 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
12 Hb_005946_180 0.3668928251 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
13 Hb_011344_060 0.3685848787 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]
14 Hb_000139_210 0.3714337863 - - -
15 Hb_000264_330 0.3728466408 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
16 Hb_006925_090 0.3740478322 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
17 Hb_004970_080 0.3776985698 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
18 Hb_001950_130 0.3790098503 - - -
19 Hb_010534_030 0.3797066619 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_000752_030 0.3799382058 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]

Gene co-expression network

sample Hb_001195_430 Hb_001195_430 Hb_011174_030 Hb_011174_030 Hb_001195_430--Hb_011174_030 Hb_011505_010 Hb_011505_010 Hb_001195_430--Hb_011505_010 Hb_010815_050 Hb_010815_050 Hb_001195_430--Hb_010815_050 Hb_002435_020 Hb_002435_020 Hb_001195_430--Hb_002435_020 Hb_000069_580 Hb_000069_580 Hb_001195_430--Hb_000069_580 Hb_002259_180 Hb_002259_180 Hb_001195_430--Hb_002259_180 Hb_011174_030--Hb_002259_180 Hb_011174_030--Hb_002435_020 Hb_006355_120 Hb_006355_120 Hb_011174_030--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_011174_030--Hb_001410_050 Hb_011174_030--Hb_000069_580 Hb_006925_090 Hb_006925_090 Hb_011505_010--Hb_006925_090 Hb_000260_150 Hb_000260_150 Hb_011505_010--Hb_000260_150 Hb_000392_460 Hb_000392_460 Hb_011505_010--Hb_000392_460 Hb_104498_030 Hb_104498_030 Hb_011505_010--Hb_104498_030 Hb_011505_010--Hb_011174_030 Hb_000025_130 Hb_000025_130 Hb_010815_050--Hb_000025_130 Hb_010815_050--Hb_011174_030 Hb_002791_040 Hb_002791_040 Hb_010815_050--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_010815_050--Hb_001190_050 Hb_003124_180 Hb_003124_180 Hb_010815_050--Hb_003124_180 Hb_002435_020--Hb_000069_580 Hb_002435_020--Hb_002259_180 Hb_008221_020 Hb_008221_020 Hb_002435_020--Hb_008221_020 Hb_002435_020--Hb_006355_120 Hb_002435_020--Hb_001410_050 Hb_001246_050 Hb_001246_050 Hb_002435_020--Hb_001246_050 Hb_000069_580--Hb_008221_020 Hb_000069_580--Hb_002259_180 Hb_000069_580--Hb_006355_120 Hb_000069_580--Hb_001410_050 Hb_000069_580--Hb_001246_050 Hb_002259_180--Hb_006355_120 Hb_002259_180--Hb_001410_050 Hb_002259_180--Hb_008221_020 Hb_005946_180 Hb_005946_180 Hb_002259_180--Hb_005946_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0429168 0 0 0.0159435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0325955 0 0 0

CAGE analysis