Hb_010815_050

Information

Type -
Description -
Location Contig10815: 21996-22738
Sequence    

Annotation

kegg
ID pop:POPTR_0013s08280g
description F5A9.22 family protein
nr
ID KDP38157.1
description hypothetical protein JCGZ_04800 [Jatropha curcas]
swissprot
ID F4IAT2
description THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1
trembl
ID A0A067KPU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04800 PE=4 SV=1
Gene Ontology
ID GO:0007165
description family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010815_050 0.0 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
2 Hb_000025_130 0.2578609912 - - -
3 Hb_001195_430 0.295697821 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011174_030 0.3096827606 - - -
5 Hb_002791_040 0.3388750369 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_001190_050 0.3402910451 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
7 Hb_003124_180 0.3441482705 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_024898_020 0.3638103827 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001221_010 0.3823696269 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011505_010 0.3918835203 - - -
11 Hb_006535_010 0.3986088532 - - -
12 Hb_008014_060 0.4027894913 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_003626_010 0.4111730332 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
14 Hb_026527_040 0.4154800244 - - conserved hypothetical protein [Ricinus communis]
15 Hb_014556_020 0.4157618132 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_001377_390 0.417827855 - - hypothetical protein POPTR_0002s17390g [Populus trichocarpa]
17 Hb_123199_010 0.418674221 - - SRK protein [Brassica cretica]
18 Hb_002701_190 0.4199101403 - - PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]
19 Hb_000573_030 0.4239866391 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
20 Hb_011344_060 0.4257087639 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010815_050 Hb_010815_050 Hb_000025_130 Hb_000025_130 Hb_010815_050--Hb_000025_130 Hb_001195_430 Hb_001195_430 Hb_010815_050--Hb_001195_430 Hb_011174_030 Hb_011174_030 Hb_010815_050--Hb_011174_030 Hb_002791_040 Hb_002791_040 Hb_010815_050--Hb_002791_040 Hb_001190_050 Hb_001190_050 Hb_010815_050--Hb_001190_050 Hb_003124_180 Hb_003124_180 Hb_010815_050--Hb_003124_180 Hb_000573_030 Hb_000573_030 Hb_000025_130--Hb_000573_030 Hb_000252_140 Hb_000252_140 Hb_000025_130--Hb_000252_140 Hb_007044_150 Hb_007044_150 Hb_000025_130--Hb_007044_150 Hb_001377_390 Hb_001377_390 Hb_000025_130--Hb_001377_390 Hb_069868_010 Hb_069868_010 Hb_000025_130--Hb_069868_010 Hb_001195_430--Hb_011174_030 Hb_011505_010 Hb_011505_010 Hb_001195_430--Hb_011505_010 Hb_002435_020 Hb_002435_020 Hb_001195_430--Hb_002435_020 Hb_000069_580 Hb_000069_580 Hb_001195_430--Hb_000069_580 Hb_002259_180 Hb_002259_180 Hb_001195_430--Hb_002259_180 Hb_011174_030--Hb_002259_180 Hb_011174_030--Hb_002435_020 Hb_006355_120 Hb_006355_120 Hb_011174_030--Hb_006355_120 Hb_001410_050 Hb_001410_050 Hb_011174_030--Hb_001410_050 Hb_011174_030--Hb_000069_580 Hb_002791_040--Hb_001190_050 Hb_008014_060 Hb_008014_060 Hb_002791_040--Hb_008014_060 Hb_003626_010 Hb_003626_010 Hb_002791_040--Hb_003626_010 Hb_002791_040--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002791_040--Hb_008221_020 Hb_002791_040--Hb_002435_020 Hb_001190_050--Hb_008014_060 Hb_001190_050--Hb_000069_580 Hb_001190_050--Hb_008221_020 Hb_001190_050--Hb_003626_010 Hb_001190_050--Hb_002435_020 Hb_000402_110 Hb_000402_110 Hb_003124_180--Hb_000402_110 Hb_000613_150 Hb_000613_150 Hb_003124_180--Hb_000613_150 Hb_001632_030 Hb_001632_030 Hb_003124_180--Hb_001632_030 Hb_002701_190 Hb_002701_190 Hb_003124_180--Hb_002701_190 Hb_000890_090 Hb_000890_090 Hb_003124_180--Hb_000890_090 Hb_006655_040 Hb_006655_040 Hb_003124_180--Hb_006655_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0587424 0 0 0.0344166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.070458 0 0.0287655 0

CAGE analysis