Hb_007044_150

Information

Type -
Description -
Location Contig7044: 112765-113768
Sequence    

Annotation

kegg
ID pop:POPTR_0013s12470g
description RNA polymerase subunit family protein
nr
ID XP_012065144.1
description PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
swissprot
ID Q9M1A8
description DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=NRPB8B PE=1 SV=1
trembl
ID A0A067L7B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05749 PE=4 SV=1
Gene Ontology
ID GO:0006351
description dna-directed rna polymerases ii and v subunit 8a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_150 0.0 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
2 Hb_000573_030 0.1464654296 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
3 Hb_000800_100 0.240918218 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
4 Hb_008202_030 0.2445897228 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
5 Hb_003621_010 0.2534173184 - - -
6 Hb_009722_020 0.2777665824 - - -
7 Hb_023813_010 0.2856035598 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
8 Hb_096490_010 0.2878925059 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
9 Hb_000025_130 0.2911097549 - - -
10 Hb_005595_020 0.2928418683 - - -
11 Hb_000092_210 0.3039219155 - - -
12 Hb_069868_010 0.3112884996 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
13 Hb_007426_240 0.3317810086 - - -
14 Hb_000246_140 0.3461018439 - - xylulose kinase, putative [Ricinus communis]
15 Hb_000529_120 0.3469019351 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
16 Hb_000252_230 0.3580365774 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
17 Hb_000809_150 0.3601677956 - - -
18 Hb_001105_060 0.3604444061 - - hypothetical protein CISIN_1g0045352mg, partial [Citrus sinensis]
19 Hb_075642_010 0.3634733843 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
20 Hb_005222_010 0.3637427158 - - hypothetical protein MTR_1g033950 [Medicago truncatula]

Gene co-expression network

sample Hb_007044_150 Hb_007044_150 Hb_000573_030 Hb_000573_030 Hb_007044_150--Hb_000573_030 Hb_000800_100 Hb_000800_100 Hb_007044_150--Hb_000800_100 Hb_008202_030 Hb_008202_030 Hb_007044_150--Hb_008202_030 Hb_003621_010 Hb_003621_010 Hb_007044_150--Hb_003621_010 Hb_009722_020 Hb_009722_020 Hb_007044_150--Hb_009722_020 Hb_023813_010 Hb_023813_010 Hb_007044_150--Hb_023813_010 Hb_000573_030--Hb_009722_020 Hb_000573_030--Hb_023813_010 Hb_000092_210 Hb_000092_210 Hb_000573_030--Hb_000092_210 Hb_000573_030--Hb_008202_030 Hb_007426_240 Hb_007426_240 Hb_000573_030--Hb_007426_240 Hb_000800_100--Hb_008202_030 Hb_000800_100--Hb_009722_020 Hb_000800_100--Hb_023813_010 Hb_000800_100--Hb_000092_210 Hb_000800_100--Hb_003621_010 Hb_000800_100--Hb_007426_240 Hb_008202_030--Hb_009722_020 Hb_008202_030--Hb_023813_010 Hb_008202_030--Hb_000092_210 Hb_008202_030--Hb_003621_010 Hb_008202_030--Hb_007426_240 Hb_069868_010 Hb_069868_010 Hb_003621_010--Hb_069868_010 Hb_000246_140 Hb_000246_140 Hb_003621_010--Hb_000246_140 Hb_075642_010 Hb_075642_010 Hb_003621_010--Hb_075642_010 Hb_005222_010 Hb_005222_010 Hb_003621_010--Hb_005222_010 Hb_009722_020--Hb_023813_010 Hb_009722_020--Hb_000092_210 Hb_009722_020--Hb_007426_240 Hb_000529_120 Hb_000529_120 Hb_009722_020--Hb_000529_120 Hb_023813_010--Hb_000092_210 Hb_023813_010--Hb_007426_240 Hb_023813_010--Hb_000529_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0654674 0 0 0.409661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144686 0 0 0

CAGE analysis