Hb_000573_030

Information

Type -
Description -
Location Contig573: 15258-15688
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012071264.1
description PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L493
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01072 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000573_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
2 Hb_007044_150 0.1464654296 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Jatropha curcas]
3 Hb_009722_020 0.2188395579 - - -
4 Hb_023813_010 0.2193405105 - - PREDICTED: uncharacterized protein LOC105162193 [Sesamum indicum]
5 Hb_000092_210 0.2235468022 - - -
6 Hb_008202_030 0.232833634 - - hypothetical protein B456_002G115600 [Gossypium raimondii]
7 Hb_007426_240 0.235816498 - - -
8 Hb_000800_100 0.2380794697 - - hypothetical protein JCGZ_01543 [Jatropha curcas]
9 Hb_000529_120 0.2446058674 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
10 Hb_000025_130 0.2690970379 - - -
11 Hb_000173_300 0.2813655232 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
12 Hb_026113_020 0.2880184889 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_006684_020 0.2900059011 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000976_220 0.2970209049 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
15 Hb_127120_010 0.2970556727 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_007407_030 0.2971841853 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
17 Hb_163413_010 0.3268545545 - - PREDICTED: uncharacterized protein LOC102604542 [Solanum tuberosum]
18 Hb_003621_010 0.3281597356 - - -
19 Hb_005595_020 0.3357184708 - - -
20 Hb_069868_010 0.3494658373 - - hypothetical protein JCGZ_14833 [Jatropha curcas]

Gene co-expression network

sample Hb_000573_030 Hb_000573_030 Hb_007044_150 Hb_007044_150 Hb_000573_030--Hb_007044_150 Hb_009722_020 Hb_009722_020 Hb_000573_030--Hb_009722_020 Hb_023813_010 Hb_023813_010 Hb_000573_030--Hb_023813_010 Hb_000092_210 Hb_000092_210 Hb_000573_030--Hb_000092_210 Hb_008202_030 Hb_008202_030 Hb_000573_030--Hb_008202_030 Hb_007426_240 Hb_007426_240 Hb_000573_030--Hb_007426_240 Hb_000800_100 Hb_000800_100 Hb_007044_150--Hb_000800_100 Hb_007044_150--Hb_008202_030 Hb_003621_010 Hb_003621_010 Hb_007044_150--Hb_003621_010 Hb_007044_150--Hb_009722_020 Hb_007044_150--Hb_023813_010 Hb_009722_020--Hb_023813_010 Hb_009722_020--Hb_000092_210 Hb_009722_020--Hb_008202_030 Hb_009722_020--Hb_007426_240 Hb_009722_020--Hb_000800_100 Hb_000529_120 Hb_000529_120 Hb_009722_020--Hb_000529_120 Hb_023813_010--Hb_000092_210 Hb_023813_010--Hb_007426_240 Hb_023813_010--Hb_008202_030 Hb_023813_010--Hb_000529_120 Hb_023813_010--Hb_000800_100 Hb_000092_210--Hb_007426_240 Hb_000092_210--Hb_000529_120 Hb_000092_210--Hb_008202_030 Hb_000173_300 Hb_000173_300 Hb_000092_210--Hb_000173_300 Hb_008202_030--Hb_000800_100 Hb_008202_030--Hb_003621_010 Hb_008202_030--Hb_007426_240 Hb_007426_240--Hb_000529_120 Hb_007426_240--Hb_000173_300 Hb_026113_020 Hb_026113_020 Hb_007426_240--Hb_026113_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.110608 0 0 0.616204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.468418 0 0 0

CAGE analysis