Hb_000890_090

Information

Type transcription factor
Description TF Family: ERF
Location Contig890: 104980-106008
Sequence    

Annotation

kegg
ID rcu:RCOM_0680360
description DNA binding protein, putative
nr
ID XP_012069379.1
description PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
swissprot
ID Q6J9Q2
description Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2
trembl
ID A0A067L675
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02003 PE=4 SV=1
Gene Ontology
ID GO:0009908
description ethylene-responsive transcription factor erf086

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61599: 105151-105428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_090 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
2 Hb_026740_010 0.2092762263 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
3 Hb_000172_160 0.2848930702 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
4 Hb_044555_010 0.2969456792 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_000599_310 0.2984524972 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
6 Hb_001828_030 0.3079320472 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
7 Hb_003124_180 0.3091612246 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_006120_090 0.3097138799 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
9 Hb_002282_040 0.3219010752 - - hypothetical protein VITISV_030841 [Vitis vinifera]
10 Hb_001437_090 0.3255330289 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit [Jatropha curcas]
11 Hb_002338_030 0.3268420662 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
12 Hb_000317_530 0.3279985433 - - hypothetical protein, partial [Pseudomonas fluorescens]
13 Hb_001632_030 0.337022604 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
14 Hb_088274_010 0.3387730011 - - PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
15 Hb_000005_400 0.3430023188 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
16 Hb_003938_210 0.350920468 - - triacylglycerol lipase, putative [Ricinus communis]
17 Hb_000613_150 0.3515291403 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
18 Hb_185224_010 0.3524418834 - - zinc finger protein, putative [Ricinus communis]
19 Hb_001979_030 0.3551730657 - - hypothetical protein POPTR_0016s06130g [Populus trichocarpa]
20 Hb_002835_340 0.3554055955 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]

Gene co-expression network

sample Hb_000890_090 Hb_000890_090 Hb_026740_010 Hb_026740_010 Hb_000890_090--Hb_026740_010 Hb_000172_160 Hb_000172_160 Hb_000890_090--Hb_000172_160 Hb_044555_010 Hb_044555_010 Hb_000890_090--Hb_044555_010 Hb_000599_310 Hb_000599_310 Hb_000890_090--Hb_000599_310 Hb_001828_030 Hb_001828_030 Hb_000890_090--Hb_001828_030 Hb_003124_180 Hb_003124_180 Hb_000890_090--Hb_003124_180 Hb_012163_030 Hb_012163_030 Hb_026740_010--Hb_012163_030 Hb_001911_070 Hb_001911_070 Hb_026740_010--Hb_001911_070 Hb_026740_010--Hb_044555_010 Hb_001632_030 Hb_001632_030 Hb_026740_010--Hb_001632_030 Hb_000317_530 Hb_000317_530 Hb_026740_010--Hb_000317_530 Hb_006970_140 Hb_006970_140 Hb_000172_160--Hb_006970_140 Hb_000139_490 Hb_000139_490 Hb_000172_160--Hb_000139_490 Hb_006152_040 Hb_006152_040 Hb_000172_160--Hb_006152_040 Hb_000057_190 Hb_000057_190 Hb_000172_160--Hb_000057_190 Hb_157022_030 Hb_157022_030 Hb_000172_160--Hb_157022_030 Hb_004097_040 Hb_004097_040 Hb_044555_010--Hb_004097_040 Hb_004200_030 Hb_004200_030 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_007386_010 Hb_007386_010 Hb_044555_010--Hb_007386_010 Hb_001979_030 Hb_001979_030 Hb_044555_010--Hb_001979_030 Hb_000136_160 Hb_000136_160 Hb_044555_010--Hb_000136_160 Hb_002338_030 Hb_002338_030 Hb_000599_310--Hb_002338_030 Hb_002835_340 Hb_002835_340 Hb_000599_310--Hb_002835_340 Hb_000886_030 Hb_000886_030 Hb_000599_310--Hb_000886_030 Hb_007849_010 Hb_007849_010 Hb_000599_310--Hb_007849_010 Hb_000049_200 Hb_000049_200 Hb_000599_310--Hb_000049_200 Hb_002960_090 Hb_002960_090 Hb_000599_310--Hb_002960_090 Hb_001355_130 Hb_001355_130 Hb_001828_030--Hb_001355_130 Hb_002043_110 Hb_002043_110 Hb_001828_030--Hb_002043_110 Hb_000504_110 Hb_000504_110 Hb_001828_030--Hb_000504_110 Hb_000005_400 Hb_000005_400 Hb_001828_030--Hb_000005_400 Hb_007432_020 Hb_007432_020 Hb_001828_030--Hb_007432_020 Hb_000166_060 Hb_000166_060 Hb_001828_030--Hb_000166_060 Hb_000402_110 Hb_000402_110 Hb_003124_180--Hb_000402_110 Hb_000613_150 Hb_000613_150 Hb_003124_180--Hb_000613_150 Hb_003124_180--Hb_001632_030 Hb_002701_190 Hb_002701_190 Hb_003124_180--Hb_002701_190 Hb_006655_040 Hb_006655_040 Hb_003124_180--Hb_006655_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0328982 0.0365443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489096 0.0384683 0 0.0463781 0

CAGE analysis