Hb_000172_160

Information

Type -
Description -
Location Contig172: 196128-199228
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08030g
description POPTRDRAFT_207518; hypothetical protein
nr
ID XP_006380428.1
description hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
swissprot
ID Q12725
description Glucan 1,3-beta-glucosidase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=EXG1 PE=3 SV=2
trembl
ID U5G487
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s05770g PE=3 SV=1
Gene Ontology
ID GO:0004553
description probable glucan -beta-glucosidase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_160 0.0 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
2 Hb_006970_140 0.2730645216 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
3 Hb_000139_490 0.275681097 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
4 Hb_006152_040 0.2843503302 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
5 Hb_000890_090 0.2848930702 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
6 Hb_000057_190 0.2856403755 - - conserved hypothetical protein [Ricinus communis]
7 Hb_157022_030 0.2883323628 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
8 Hb_004449_040 0.2924423441 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
9 Hb_004162_230 0.2932103612 - - PREDICTED: histone H2B [Jatropha curcas]
10 Hb_006275_060 0.2941995977 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_000663_070 0.2959780059 - - cyclin A, putative [Ricinus communis]
12 Hb_000155_150 0.2963037286 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_002411_060 0.298455625 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
14 Hb_000172_090 0.3030879425 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
15 Hb_001080_050 0.3055521005 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
16 Hb_000684_120 0.3078787572 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
17 Hb_002307_020 0.3081916783 - - PREDICTED: histone H1-like [Jatropha curcas]
18 Hb_001195_300 0.3091383885 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
19 Hb_025214_120 0.3130790364 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
20 Hb_000003_060 0.3143229871 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_160 Hb_000172_160 Hb_006970_140 Hb_006970_140 Hb_000172_160--Hb_006970_140 Hb_000139_490 Hb_000139_490 Hb_000172_160--Hb_000139_490 Hb_006152_040 Hb_006152_040 Hb_000172_160--Hb_006152_040 Hb_000890_090 Hb_000890_090 Hb_000172_160--Hb_000890_090 Hb_000057_190 Hb_000057_190 Hb_000172_160--Hb_000057_190 Hb_157022_030 Hb_157022_030 Hb_000172_160--Hb_157022_030 Hb_000173_050 Hb_000173_050 Hb_006970_140--Hb_000173_050 Hb_003178_020 Hb_003178_020 Hb_006970_140--Hb_003178_020 Hb_006275_060 Hb_006275_060 Hb_006970_140--Hb_006275_060 Hb_101146_010 Hb_101146_010 Hb_006970_140--Hb_101146_010 Hb_000684_120 Hb_000684_120 Hb_006970_140--Hb_000684_120 Hb_030627_070 Hb_030627_070 Hb_006970_140--Hb_030627_070 Hb_000139_490--Hb_157022_030 Hb_000926_230 Hb_000926_230 Hb_000139_490--Hb_000926_230 Hb_004162_230 Hb_004162_230 Hb_000139_490--Hb_004162_230 Hb_002411_060 Hb_002411_060 Hb_000139_490--Hb_002411_060 Hb_003078_060 Hb_003078_060 Hb_000139_490--Hb_003078_060 Hb_000029_100 Hb_000029_100 Hb_000139_490--Hb_000029_100 Hb_000172_090 Hb_000172_090 Hb_006152_040--Hb_000172_090 Hb_000958_040 Hb_000958_040 Hb_006152_040--Hb_000958_040 Hb_011930_170 Hb_011930_170 Hb_006152_040--Hb_011930_170 Hb_000003_060 Hb_000003_060 Hb_006152_040--Hb_000003_060 Hb_093458_020 Hb_093458_020 Hb_006152_040--Hb_093458_020 Hb_000500_340 Hb_000500_340 Hb_006152_040--Hb_000500_340 Hb_026740_010 Hb_026740_010 Hb_000890_090--Hb_026740_010 Hb_044555_010 Hb_044555_010 Hb_000890_090--Hb_044555_010 Hb_000599_310 Hb_000599_310 Hb_000890_090--Hb_000599_310 Hb_001828_030 Hb_001828_030 Hb_000890_090--Hb_001828_030 Hb_003124_180 Hb_003124_180 Hb_000890_090--Hb_003124_180 Hb_000057_190--Hb_000003_060 Hb_000563_180 Hb_000563_180 Hb_000057_190--Hb_000563_180 Hb_001780_080 Hb_001780_080 Hb_000057_190--Hb_001780_080 Hb_010436_080 Hb_010436_080 Hb_000057_190--Hb_010436_080 Hb_000057_190--Hb_093458_020 Hb_001080_050 Hb_001080_050 Hb_000057_190--Hb_001080_050 Hb_157022_030--Hb_004162_230 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131097 0 0.0709343 0.0487034 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0298542 0.0234876 0 0.0281112 0

CAGE analysis