Hb_006152_040

Information

Type transcription factor
Description TF Family: GNAT
Location Contig6152: 35216-42016
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04360g
description POPTRDRAFT_560444; hypothetical protein
nr
ID XP_012085958.1
description PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
swissprot
ID Q6ZW49
description PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
trembl
ID A0A067JQS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22453 PE=4 SV=1
Gene Ontology
ID GO:0008080
description n- - isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51172: 35180-42078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006152_040 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
2 Hb_000172_090 0.1653697293 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
3 Hb_000958_040 0.1773793172 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
4 Hb_011930_170 0.1917076102 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_000003_060 0.1951649899 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
6 Hb_093458_020 0.1976045746 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
7 Hb_000500_340 0.2053602062 - - PREDICTED: exonuclease 1 [Jatropha curcas]
8 Hb_000057_190 0.2084237645 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000954_040 0.2104429414 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
10 Hb_004650_030 0.2111862438 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
11 Hb_000155_150 0.2127107516 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
12 Hb_077562_020 0.2134435686 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
13 Hb_004531_080 0.2138202247 - - hypothetical protein RCOM_1491960 [Ricinus communis]
14 Hb_011512_010 0.2182156346 - - glutathione s-transferase, putative [Ricinus communis]
15 Hb_000086_670 0.2187548553 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
16 Hb_003784_040 0.2195304586 - - Afadin- and alpha-actinin-binding protein, putative [Ricinus communis]
17 Hb_002030_130 0.2227189467 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_001780_080 0.2227420478 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
19 Hb_007632_210 0.2240148401 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
20 Hb_124677_050 0.2246615462 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006152_040 Hb_006152_040 Hb_000172_090 Hb_000172_090 Hb_006152_040--Hb_000172_090 Hb_000958_040 Hb_000958_040 Hb_006152_040--Hb_000958_040 Hb_011930_170 Hb_011930_170 Hb_006152_040--Hb_011930_170 Hb_000003_060 Hb_000003_060 Hb_006152_040--Hb_000003_060 Hb_093458_020 Hb_093458_020 Hb_006152_040--Hb_093458_020 Hb_000500_340 Hb_000500_340 Hb_006152_040--Hb_000500_340 Hb_000172_090--Hb_000500_340 Hb_000139_280 Hb_000139_280 Hb_000172_090--Hb_000139_280 Hb_000260_040 Hb_000260_040 Hb_000172_090--Hb_000260_040 Hb_003228_050 Hb_003228_050 Hb_000172_090--Hb_003228_050 Hb_007632_210 Hb_007632_210 Hb_000172_090--Hb_007632_210 Hb_000155_150 Hb_000155_150 Hb_000172_090--Hb_000155_150 Hb_000954_040 Hb_000954_040 Hb_000958_040--Hb_000954_040 Hb_007163_030 Hb_007163_030 Hb_000958_040--Hb_007163_030 Hb_011861_040 Hb_011861_040 Hb_000958_040--Hb_011861_040 Hb_001328_070 Hb_001328_070 Hb_000958_040--Hb_001328_070 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_001691_220 Hb_001691_220 Hb_011930_170--Hb_001691_220 Hb_011930_170--Hb_000958_040 Hb_002701_160 Hb_002701_160 Hb_011930_170--Hb_002701_160 Hb_001579_290 Hb_001579_290 Hb_011930_170--Hb_001579_290 Hb_005357_180 Hb_005357_180 Hb_011930_170--Hb_005357_180 Hb_000003_060--Hb_093458_020 Hb_004968_040 Hb_004968_040 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_002871_130 Hb_002871_130 Hb_093458_020--Hb_002871_130 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_093458_020--Hb_004968_040 Hb_124677_050 Hb_124677_050 Hb_000500_340--Hb_124677_050 Hb_004531_080 Hb_004531_080 Hb_000500_340--Hb_004531_080 Hb_000500_340--Hb_007632_210 Hb_000500_340--Hb_003228_050 Hb_001584_360 Hb_001584_360 Hb_000500_340--Hb_001584_360 Hb_005183_150 Hb_005183_150 Hb_000500_340--Hb_005183_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00985961 0 0.92512 0.479982 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134441 0.0705214 0.0334385 0.392767 0.0745329

CAGE analysis