Hb_001328_070

Information

Type -
Description -
Location Contig1328: 111207-113643
Sequence    

Annotation

kegg
ID cic:CICLE_v10015086mg
description hypothetical protein
nr
ID XP_012080639.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
swissprot
ID Q9ZU91
description Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2
trembl
ID A0A067K3L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13749 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09321: 111343-113643 , PASA_asmbl_09322: 111343-113323
cDNA
(Sanger)
(ID:Location)		 007_B21.ab1: 111343-112249

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001328_070 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
2 Hb_007163_030 0.1290192909 - - hypothetical protein RCOM_0187400 [Ricinus communis]
3 Hb_011861_040 0.1345581055 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
4 Hb_093458_020 0.1350927609 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
5 Hb_000958_040 0.1393350383 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
6 Hb_000003_060 0.1413234775 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
7 Hb_000365_210 0.1438322718 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
8 Hb_000334_120 0.1458944765 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
9 Hb_002284_260 0.1470944668 - - brca1 interacting protein helicase 1 brip1, putative [Ricinus communis]
10 Hb_020301_020 0.153098799 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_001649_050 0.1562578071 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
12 Hb_001584_360 0.1565486547 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
13 Hb_001366_380 0.158327232 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
14 Hb_033041_010 0.1605177198 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
15 Hb_002871_130 0.1609934933 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
16 Hb_000954_040 0.163009567 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
17 Hb_000260_670 0.1638949075 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
18 Hb_000028_530 0.1645664551 - - Protein regulator of cytokinesis, putative [Ricinus communis]
19 Hb_005183_150 0.1657801379 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
20 Hb_000288_090 0.1660860319 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001328_070 Hb_001328_070 Hb_007163_030 Hb_007163_030 Hb_001328_070--Hb_007163_030 Hb_011861_040 Hb_011861_040 Hb_001328_070--Hb_011861_040 Hb_093458_020 Hb_093458_020 Hb_001328_070--Hb_093458_020 Hb_000958_040 Hb_000958_040 Hb_001328_070--Hb_000958_040 Hb_000003_060 Hb_000003_060 Hb_001328_070--Hb_000003_060 Hb_000365_210 Hb_000365_210 Hb_001328_070--Hb_000365_210 Hb_007163_030--Hb_000958_040 Hb_001934_040 Hb_001934_040 Hb_007163_030--Hb_001934_040 Hb_007163_030--Hb_011861_040 Hb_001649_050 Hb_001649_050 Hb_007163_030--Hb_001649_050 Hb_000334_120 Hb_000334_120 Hb_007163_030--Hb_000334_120 Hb_000954_040 Hb_000954_040 Hb_011861_040--Hb_000954_040 Hb_002871_130 Hb_002871_130 Hb_011861_040--Hb_002871_130 Hb_000260_670 Hb_000260_670 Hb_011861_040--Hb_000260_670 Hb_011861_040--Hb_001649_050 Hb_003360_010 Hb_003360_010 Hb_011861_040--Hb_003360_010 Hb_080147_070 Hb_080147_070 Hb_011861_040--Hb_080147_070 Hb_002284_260 Hb_002284_260 Hb_093458_020--Hb_002284_260 Hb_000566_130 Hb_000566_130 Hb_093458_020--Hb_000566_130 Hb_093458_020--Hb_002871_130 Hb_093458_020--Hb_000003_060 Hb_000077_110 Hb_000077_110 Hb_093458_020--Hb_000077_110 Hb_004968_040 Hb_004968_040 Hb_093458_020--Hb_004968_040 Hb_000958_040--Hb_000954_040 Hb_000958_040--Hb_011861_040 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_000003_060--Hb_004968_040 Hb_000288_090 Hb_000288_090 Hb_000003_060--Hb_000288_090 Hb_010436_080 Hb_010436_080 Hb_000003_060--Hb_010436_080 Hb_006970_130 Hb_006970_130 Hb_000003_060--Hb_006970_130 Hb_000057_190 Hb_000057_190 Hb_000003_060--Hb_000057_190 Hb_001501_070 Hb_001501_070 Hb_000365_210--Hb_001501_070 Hb_000365_210--Hb_000288_090 Hb_001761_010 Hb_001761_010 Hb_000365_210--Hb_001761_010 Hb_008406_100 Hb_008406_100 Hb_000365_210--Hb_008406_100 Hb_001584_360 Hb_001584_360 Hb_000365_210--Hb_001584_360 Hb_000028_530 Hb_000028_530 Hb_000365_210--Hb_000028_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.16425 5.42644 187.102 74.4312 2.23393 3.82226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5546 1.06721 2.99812 57.9005 6.99281

CAGE analysis