Hb_007163_030

Information

Type -
Description -
Location Contig7163: 49611-53515
Sequence    

Annotation

kegg
ID rcu:RCOM_0187400
description hypothetical protein
nr
ID XP_002528892.1
description hypothetical protein RCOM_0187400 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0187400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description homeodomain-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55452: 50079-53221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_030 0.0 - - hypothetical protein RCOM_0187400 [Ricinus communis]
2 Hb_001328_070 0.1290192909 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
3 Hb_000958_040 0.130791909 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
4 Hb_001934_040 0.1425087131 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
5 Hb_011861_040 0.1477935596 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
6 Hb_001649_050 0.1489748563 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
7 Hb_000334_120 0.1510615094 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
8 Hb_004316_080 0.153974811 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
9 Hb_000954_040 0.1565487891 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
10 Hb_000103_460 0.158274199 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
11 Hb_000365_210 0.1623280662 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
12 Hb_006316_090 0.1632511944 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_000028_530 0.1642373287 - - Protein regulator of cytokinesis, putative [Ricinus communis]
14 Hb_002871_130 0.1654190846 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
15 Hb_001366_380 0.1663981163 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
16 Hb_001761_010 0.1689281503 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
17 Hb_093458_020 0.17175432 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
18 Hb_000343_010 0.1724487473 - - F3F9.11 [Arabidopsis thaliana]
19 Hb_001369_550 0.1767628686 - - 21 kDa protein precursor, putative [Ricinus communis]
20 Hb_033041_010 0.1770072771 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]

Gene co-expression network

sample Hb_007163_030 Hb_007163_030 Hb_001328_070 Hb_001328_070 Hb_007163_030--Hb_001328_070 Hb_000958_040 Hb_000958_040 Hb_007163_030--Hb_000958_040 Hb_001934_040 Hb_001934_040 Hb_007163_030--Hb_001934_040 Hb_011861_040 Hb_011861_040 Hb_007163_030--Hb_011861_040 Hb_001649_050 Hb_001649_050 Hb_007163_030--Hb_001649_050 Hb_000334_120 Hb_000334_120 Hb_007163_030--Hb_000334_120 Hb_001328_070--Hb_011861_040 Hb_093458_020 Hb_093458_020 Hb_001328_070--Hb_093458_020 Hb_001328_070--Hb_000958_040 Hb_000003_060 Hb_000003_060 Hb_001328_070--Hb_000003_060 Hb_000365_210 Hb_000365_210 Hb_001328_070--Hb_000365_210 Hb_000954_040 Hb_000954_040 Hb_000958_040--Hb_000954_040 Hb_000958_040--Hb_011861_040 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_002081_060 Hb_002081_060 Hb_001934_040--Hb_002081_060 Hb_001761_010 Hb_001761_010 Hb_001934_040--Hb_001761_010 Hb_001934_040--Hb_000334_120 Hb_000907_140 Hb_000907_140 Hb_001934_040--Hb_000907_140 Hb_000343_010 Hb_000343_010 Hb_001934_040--Hb_000343_010 Hb_000664_080 Hb_000664_080 Hb_001934_040--Hb_000664_080 Hb_011861_040--Hb_000954_040 Hb_002871_130 Hb_002871_130 Hb_011861_040--Hb_002871_130 Hb_000260_670 Hb_000260_670 Hb_011861_040--Hb_000260_670 Hb_011861_040--Hb_001649_050 Hb_003360_010 Hb_003360_010 Hb_011861_040--Hb_003360_010 Hb_080147_070 Hb_080147_070 Hb_011861_040--Hb_080147_070 Hb_005306_030 Hb_005306_030 Hb_001649_050--Hb_005306_030 Hb_011849_030 Hb_011849_030 Hb_001649_050--Hb_011849_030 Hb_004607_020 Hb_004607_020 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_001366_380 Hb_004316_080 Hb_004316_080 Hb_001649_050--Hb_004316_080 Hb_001649_050--Hb_000260_670 Hb_000028_530 Hb_000028_530 Hb_000334_120--Hb_000028_530 Hb_033041_010 Hb_033041_010 Hb_000334_120--Hb_033041_010 Hb_001584_360 Hb_001584_360 Hb_000334_120--Hb_001584_360 Hb_000189_350 Hb_000189_350 Hb_000334_120--Hb_000189_350 Hb_000265_100 Hb_000265_100 Hb_000334_120--Hb_000265_100 Hb_005276_090 Hb_005276_090 Hb_000334_120--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0962526 0.192227 4.53934 1.01022 0.0922933 0.0380529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314462 0.0989581 0.0464698 1.30361 0.258717

CAGE analysis