Hb_000029_100

Information

Type -
Description -
Location Contig29: 105541-109068
Sequence    

Annotation

kegg
ID gmx:100778865
description nicalin-1-like
nr
ID XP_011006549.1
description PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
swissprot
ID Q5ZJH2
description Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1
trembl
ID A0A067ETA4
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0085682mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description nicalin-1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_100 0.0 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
2 Hb_000029_090 0.1883748685 - - Nicalin precursor, putative [Ricinus communis]
3 Hb_000926_230 0.2142879659 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006769_010 0.2272120861 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
5 Hb_133724_010 0.2299186101 - - conserved hypothetical protein [Ricinus communis]
6 Hb_099878_050 0.2302362064 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
7 Hb_005686_120 0.2321323658 - - -
8 Hb_003925_030 0.2343297975 - - conserved hypothetical protein [Ricinus communis]
9 Hb_077573_010 0.2354810038 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002148_020 0.2407647391 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_085972_010 0.2407730792 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
12 Hb_000139_490 0.2417907756 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
13 Hb_090158_010 0.2456573023 - - hypothetical protein RCOM_1968400 [Ricinus communis]
14 Hb_000028_060 0.2493209472 - - -
15 Hb_010789_020 0.2519095989 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
16 Hb_066913_010 0.2524347084 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
17 Hb_000117_080 0.253037422 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
18 Hb_146675_010 0.2558647282 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
19 Hb_130067_010 0.2573249194 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_012506_010 0.2576747474 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_100 Hb_000029_100 Hb_000029_090 Hb_000029_090 Hb_000029_100--Hb_000029_090 Hb_000926_230 Hb_000926_230 Hb_000029_100--Hb_000926_230 Hb_006769_010 Hb_006769_010 Hb_000029_100--Hb_006769_010 Hb_133724_010 Hb_133724_010 Hb_000029_100--Hb_133724_010 Hb_099878_050 Hb_099878_050 Hb_000029_100--Hb_099878_050 Hb_005686_120 Hb_005686_120 Hb_000029_100--Hb_005686_120 Hb_002411_080 Hb_002411_080 Hb_000029_090--Hb_002411_080 Hb_006502_030 Hb_006502_030 Hb_000029_090--Hb_006502_030 Hb_122548_010 Hb_122548_010 Hb_000029_090--Hb_122548_010 Hb_000029_090--Hb_005686_120 Hb_000622_200 Hb_000622_200 Hb_000029_090--Hb_000622_200 Hb_010789_020 Hb_010789_020 Hb_000029_090--Hb_010789_020 Hb_000139_490 Hb_000139_490 Hb_000926_230--Hb_000139_490 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_074836_010 Hb_074836_010 Hb_000926_230--Hb_074836_010 Hb_003925_030 Hb_003925_030 Hb_006769_010--Hb_003925_030 Hb_000130_060 Hb_000130_060 Hb_006769_010--Hb_000130_060 Hb_004724_120 Hb_004724_120 Hb_006769_010--Hb_004724_120 Hb_002836_100 Hb_002836_100 Hb_006769_010--Hb_002836_100 Hb_134894_010 Hb_134894_010 Hb_006769_010--Hb_134894_010 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_002388_010 Hb_002388_010 Hb_133724_010--Hb_002388_010 Hb_133724_010--Hb_099878_050 Hb_001829_040 Hb_001829_040 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_005686_120--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_005686_120--Hb_130613_010 Hb_000260_720 Hb_000260_720 Hb_005686_120--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_005686_120--Hb_002983_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.04494 0.932348 1.62234 2.96228 0.127151 2.08131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.893506 1.17104 0 1.80339 0

CAGE analysis