Hb_006769_010

Information

Type -
Description -
Location Contig6769: 5065-6845
Sequence    

Annotation

kegg
ID rcu:RCOM_0497320
description DNA (cytosine-5)-methyltransferase, putative (EC:2.3.1.97)
nr
ID KDP42494.1
description hypothetical protein JCGZ_00291 [Jatropha curcas]
swissprot
ID Q7Y1I7
description DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica GN=MET1A PE=2 SV=1
trembl
ID A0A067LEH5
description Cytosine-specific methyltransferase OS=Jatropha curcas GN=JCGZ_00291 PE=3 SV=1
Gene Ontology
ID GO:0016740
description dna (cytosine-5)-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53606: 5381-5835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006769_010 0.0 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
2 Hb_003925_030 0.2250968163 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000029_100 0.2272120861 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
4 Hb_000130_060 0.2287836099 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_004724_120 0.2297705253 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
6 Hb_002836_100 0.2348947589 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
7 Hb_134894_010 0.2396519988 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
8 Hb_004785_040 0.2466560668 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Jatropha curcas]
9 Hb_033772_070 0.2504672711 - - PREDICTED: uncharacterized protein LOC105633681 [Jatropha curcas]
10 Hb_167234_010 0.2552561604 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
11 Hb_000029_090 0.2572287768 - - Nicalin precursor, putative [Ricinus communis]
12 Hb_006717_070 0.2572357703 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
13 Hb_007785_010 0.2633396851 - - glutathione peroxidase, putative [Ricinus communis]
14 Hb_005725_230 0.264278883 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
15 Hb_000362_110 0.266133366 - - PREDICTED: uncharacterized protein LOC104612097 isoform X2 [Nelumbo nucifera]
16 Hb_014834_020 0.2677443319 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
17 Hb_001227_100 0.2682214304 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
18 Hb_011794_040 0.2696219589 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
19 Hb_005489_140 0.2706413589 - - PREDICTED: maspardin [Jatropha curcas]
20 Hb_077573_010 0.2706538938 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_006769_010 Hb_006769_010 Hb_003925_030 Hb_003925_030 Hb_006769_010--Hb_003925_030 Hb_000029_100 Hb_000029_100 Hb_006769_010--Hb_000029_100 Hb_000130_060 Hb_000130_060 Hb_006769_010--Hb_000130_060 Hb_004724_120 Hb_004724_120 Hb_006769_010--Hb_004724_120 Hb_002836_100 Hb_002836_100 Hb_006769_010--Hb_002836_100 Hb_134894_010 Hb_134894_010 Hb_006769_010--Hb_134894_010 Hb_131967_010 Hb_131967_010 Hb_003925_030--Hb_131967_010 Hb_000023_160 Hb_000023_160 Hb_003925_030--Hb_000023_160 Hb_003925_030--Hb_000029_100 Hb_002148_020 Hb_002148_020 Hb_003925_030--Hb_002148_020 Hb_000415_070 Hb_000415_070 Hb_003925_030--Hb_000415_070 Hb_000029_090 Hb_000029_090 Hb_000029_100--Hb_000029_090 Hb_000926_230 Hb_000926_230 Hb_000029_100--Hb_000926_230 Hb_133724_010 Hb_133724_010 Hb_000029_100--Hb_133724_010 Hb_099878_050 Hb_099878_050 Hb_000029_100--Hb_099878_050 Hb_005686_120 Hb_005686_120 Hb_000029_100--Hb_005686_120 Hb_000362_110 Hb_000362_110 Hb_000130_060--Hb_000362_110 Hb_002370_030 Hb_002370_030 Hb_000130_060--Hb_002370_030 Hb_026337_010 Hb_026337_010 Hb_000130_060--Hb_026337_010 Hb_003640_030 Hb_003640_030 Hb_000130_060--Hb_003640_030 Hb_000130_060--Hb_004724_120 Hb_007426_140 Hb_007426_140 Hb_000130_060--Hb_007426_140 Hb_000733_270 Hb_000733_270 Hb_004724_120--Hb_000733_270 Hb_001636_020 Hb_001636_020 Hb_004724_120--Hb_001636_020 Hb_000679_200 Hb_000679_200 Hb_004724_120--Hb_000679_200 Hb_002666_020 Hb_002666_020 Hb_004724_120--Hb_002666_020 Hb_054885_020 Hb_054885_020 Hb_004724_120--Hb_054885_020 Hb_002836_100--Hb_007426_140 Hb_083799_010 Hb_083799_010 Hb_002836_100--Hb_083799_010 Hb_001160_070 Hb_001160_070 Hb_002836_100--Hb_001160_070 Hb_000395_220 Hb_000395_220 Hb_002836_100--Hb_000395_220 Hb_075315_010 Hb_075315_010 Hb_002836_100--Hb_075315_010 Hb_033772_070 Hb_033772_070 Hb_002836_100--Hb_033772_070 Hb_006586_030 Hb_006586_030 Hb_134894_010--Hb_006586_030 Hb_001524_090 Hb_001524_090 Hb_134894_010--Hb_001524_090 Hb_027445_050 Hb_027445_050 Hb_134894_010--Hb_027445_050 Hb_001989_020 Hb_001989_020 Hb_134894_010--Hb_001989_020 Hb_000283_150 Hb_000283_150 Hb_134894_010--Hb_000283_150 Hb_009848_040 Hb_009848_040 Hb_134894_010--Hb_009848_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258985 0.258 0.177299 0.317421 0.0490353 0.314548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.057968 0.13676 0 0.680208 0

CAGE analysis