Hb_000029_090

Information

Type -
Description -
Location Contig29: 100908-104813
Sequence    

Annotation

kegg
ID rcu:RCOM_1282190
description Nicalin precursor, putative
nr
ID XP_002523845.1
description Nicalin precursor, putative [Ricinus communis]
swissprot
ID Q5XIA1
description Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1
trembl
ID B9SCX6
description Nicalin OS=Ricinus communis GN=RCOM_1282190 PE=3 SV=1
Gene Ontology
ID GO:0005773
description endoplasmic plasma ef-hand calcium-binding nicastrin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30349: 100761-100912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_090 0.0 - - Nicalin precursor, putative [Ricinus communis]
2 Hb_002411_080 0.1444419947 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006502_030 0.1475218165 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
4 Hb_122548_010 0.1545040394 - - acyl-CoA oxidase, putative [Ricinus communis]
5 Hb_005686_120 0.1551374777 - - -
6 Hb_000622_200 0.1602814016 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_010789_020 0.1613264152 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
8 Hb_085972_010 0.163028363 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
9 Hb_090158_010 0.1631082877 - - hypothetical protein RCOM_1968400 [Ricinus communis]
10 Hb_000120_540 0.1678100903 - - translation initiation factor, putative [Ricinus communis]
11 Hb_000580_100 0.1691043121 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
12 Hb_004055_050 0.1741992228 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
13 Hb_164945_010 0.1747353636 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
14 Hb_167234_010 0.1756218845 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
15 Hb_000046_080 0.1763412097 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]
16 Hb_000001_190 0.1763933027 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
17 Hb_000836_300 0.1773295297 - - caax prenyl protease ste24, putative [Ricinus communis]
18 Hb_133004_010 0.1775533717 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
19 Hb_012180_010 0.1779941982 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
20 Hb_002232_320 0.1781639103 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000029_090 Hb_000029_090 Hb_002411_080 Hb_002411_080 Hb_000029_090--Hb_002411_080 Hb_006502_030 Hb_006502_030 Hb_000029_090--Hb_006502_030 Hb_122548_010 Hb_122548_010 Hb_000029_090--Hb_122548_010 Hb_005686_120 Hb_005686_120 Hb_000029_090--Hb_005686_120 Hb_000622_200 Hb_000622_200 Hb_000029_090--Hb_000622_200 Hb_010789_020 Hb_010789_020 Hb_000029_090--Hb_010789_020 Hb_000120_540 Hb_000120_540 Hb_002411_080--Hb_000120_540 Hb_002232_320 Hb_002232_320 Hb_002411_080--Hb_002232_320 Hb_001123_030 Hb_001123_030 Hb_002411_080--Hb_001123_030 Hb_022181_030 Hb_022181_030 Hb_002411_080--Hb_022181_030 Hb_001025_110 Hb_001025_110 Hb_002411_080--Hb_001025_110 Hb_015026_130 Hb_015026_130 Hb_006502_030--Hb_015026_130 Hb_006468_010 Hb_006468_010 Hb_006502_030--Hb_006468_010 Hb_003020_100 Hb_003020_100 Hb_006502_030--Hb_003020_100 Hb_006502_030--Hb_122548_010 Hb_001114_110 Hb_001114_110 Hb_006502_030--Hb_001114_110 Hb_006006_040 Hb_006006_040 Hb_006502_030--Hb_006006_040 Hb_002983_080 Hb_002983_080 Hb_122548_010--Hb_002983_080 Hb_122548_010--Hb_015026_130 Hb_001405_210 Hb_001405_210 Hb_122548_010--Hb_001405_210 Hb_000120_550 Hb_000120_550 Hb_122548_010--Hb_000120_550 Hb_004055_050 Hb_004055_050 Hb_122548_010--Hb_004055_050 Hb_001829_040 Hb_001829_040 Hb_005686_120--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_130613_010 Hb_130613_010 Hb_005686_120--Hb_130613_010 Hb_000260_720 Hb_000260_720 Hb_005686_120--Hb_000260_720 Hb_005686_120--Hb_002983_080 Hb_000580_100 Hb_000580_100 Hb_000622_200--Hb_000580_100 Hb_010381_010 Hb_010381_010 Hb_000622_200--Hb_010381_010 Hb_001482_050 Hb_001482_050 Hb_000622_200--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_000622_200--Hb_007850_030 Hb_016734_080 Hb_016734_080 Hb_000622_200--Hb_016734_080 Hb_039021_010 Hb_039021_010 Hb_000622_200--Hb_039021_010 Hb_164945_010 Hb_164945_010 Hb_010789_020--Hb_164945_010 Hb_010789_020--Hb_000580_100 Hb_010789_020--Hb_011671_480 Hb_010789_020--Hb_010381_010 Hb_010789_020--Hb_039021_010 Hb_010789_020--Hb_000622_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.919805 1.63536 2.91912 3.32526 0.939568 2.57278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41366 1.42844 0.27759 3.09172 0.307153

CAGE analysis