Hb_002232_320

Information

Type -
Description -
Location Contig2232: 235245-237159
Sequence    

Annotation

kegg
ID rcu:RCOM_1381510
description phosphate abc transporter, putative (EC:3.6.3.27)
nr
ID AIU41664.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9C9W0
description ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1
trembl
ID A0A097P9R8
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI17 PE=2 SV=1
Gene Ontology
ID GO:0005774
description abc transporter i family member 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23126: 235289-237143
cDNA
(Sanger)
(ID:Location)		 004_F01.ab1: 235494-237053 , 031_A22.ab1: 235515-237053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_320 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000261_240 0.0891420132 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
3 Hb_007657_020 0.1029929156 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
4 Hb_003464_080 0.1076007008 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
5 Hb_000692_150 0.1100790634 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
6 Hb_000302_310 0.1113073213 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
7 Hb_000844_070 0.1120468803 - - hypothetical protein POPTR_0014s03640g [Populus trichocarpa]
8 Hb_000243_300 0.1152898547 - - catalytic, putative [Ricinus communis]
9 Hb_002311_290 0.11694714 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
10 Hb_030736_070 0.1178534638 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
11 Hb_001258_110 0.1182753814 - - transporter, putative [Ricinus communis]
12 Hb_000163_220 0.1196345673 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
13 Hb_000333_110 0.1197541955 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000260_330 0.1208750105 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
15 Hb_001123_050 0.1218522173 - - conserved hypothetical protein [Ricinus communis]
16 Hb_013738_020 0.1218949322 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_001085_110 0.1224224318 - - T6D22.2 [Arabidopsis thaliana]
18 Hb_001405_210 0.1230127403 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
19 Hb_002391_360 0.123026911 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
20 Hb_000696_010 0.1239436863 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_320 Hb_002232_320 Hb_000261_240 Hb_000261_240 Hb_002232_320--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_002232_320--Hb_007657_020 Hb_003464_080 Hb_003464_080 Hb_002232_320--Hb_003464_080 Hb_000692_150 Hb_000692_150 Hb_002232_320--Hb_000692_150 Hb_000302_310 Hb_000302_310 Hb_002232_320--Hb_000302_310 Hb_000844_070 Hb_000844_070 Hb_002232_320--Hb_000844_070 Hb_000261_240--Hb_007657_020 Hb_000089_120 Hb_000089_120 Hb_000261_240--Hb_000089_120 Hb_002311_290 Hb_002311_290 Hb_000261_240--Hb_002311_290 Hb_000398_080 Hb_000398_080 Hb_000261_240--Hb_000398_080 Hb_005460_050 Hb_005460_050 Hb_000261_240--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_000261_240--Hb_005723_020 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_007657_020--Hb_000089_120 Hb_002217_030 Hb_002217_030 Hb_003464_080--Hb_002217_030 Hb_003464_080--Hb_000089_120 Hb_000200_120 Hb_000200_120 Hb_003464_080--Hb_000200_120 Hb_143629_110 Hb_143629_110 Hb_003464_080--Hb_143629_110 Hb_116349_070 Hb_116349_070 Hb_003464_080--Hb_116349_070 Hb_001635_090 Hb_001635_090 Hb_003464_080--Hb_001635_090 Hb_009252_050 Hb_009252_050 Hb_000692_150--Hb_009252_050 Hb_008226_090 Hb_008226_090 Hb_000692_150--Hb_008226_090 Hb_005946_210 Hb_005946_210 Hb_000692_150--Hb_005946_210 Hb_134362_010 Hb_134362_010 Hb_000692_150--Hb_134362_010 Hb_004109_230 Hb_004109_230 Hb_000692_150--Hb_004109_230 Hb_044486_020 Hb_044486_020 Hb_000692_150--Hb_044486_020 Hb_001214_060 Hb_001214_060 Hb_000302_310--Hb_001214_060 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220 Hb_000011_360 Hb_000011_360 Hb_000844_070--Hb_000011_360 Hb_005588_090 Hb_005588_090 Hb_000844_070--Hb_005588_090 Hb_000120_430 Hb_000120_430 Hb_000844_070--Hb_000120_430 Hb_000844_070--Hb_116349_070 Hb_001347_040 Hb_001347_040 Hb_000844_070--Hb_001347_040 Hb_004209_020 Hb_004209_020 Hb_000844_070--Hb_004209_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9309 39.9685 34.4217 54.4378 48.6309 50.4398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5463 35.9972 11.7574 51.1172 19.209

CAGE analysis