Hb_002411_080

Information

Type -
Description -
Location Contig2411: 74673-82564
Sequence    

Annotation

kegg
ID rcu:RCOM_0621340
description hypothetical protein
nr
ID XP_002525546.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SHS7
description Sulfotransferase OS=Ricinus communis GN=RCOM_0621340 PE=3 SV=1
Gene Ontology
ID GO:0008146
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25260: 81136-81333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_540 0.1374610593 - - translation initiation factor, putative [Ricinus communis]
3 Hb_000029_090 0.1444419947 - - Nicalin precursor, putative [Ricinus communis]
4 Hb_002232_320 0.1447499207 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001123_030 0.145048709 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_022181_030 0.1490339572 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
7 Hb_001025_110 0.1519109482 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001114_090 0.1576823037 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
9 Hb_002119_080 0.1597180118 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
10 Hb_003038_120 0.1609557219 - - rer1 protein, putative [Ricinus communis]
11 Hb_000000_150 0.1614362633 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
12 Hb_000302_310 0.1619964722 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
13 Hb_162040_010 0.1667411296 - - -
14 Hb_011671_090 0.1677238404 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
15 Hb_005463_050 0.1681007205 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
16 Hb_000215_090 0.1682519287 - - cytochrome b5 domain-containing family protein [Populus trichocarpa]
17 Hb_006541_040 0.1707915634 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
18 Hb_002783_170 0.1713491816 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
19 Hb_004122_040 0.1718272254 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
20 Hb_000333_110 0.1725620767 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002411_080 Hb_002411_080 Hb_000120_540 Hb_000120_540 Hb_002411_080--Hb_000120_540 Hb_000029_090 Hb_000029_090 Hb_002411_080--Hb_000029_090 Hb_002232_320 Hb_002232_320 Hb_002411_080--Hb_002232_320 Hb_001123_030 Hb_001123_030 Hb_002411_080--Hb_001123_030 Hb_022181_030 Hb_022181_030 Hb_002411_080--Hb_022181_030 Hb_001025_110 Hb_001025_110 Hb_002411_080--Hb_001025_110 Hb_004357_050 Hb_004357_050 Hb_000120_540--Hb_004357_050 Hb_004109_340 Hb_004109_340 Hb_000120_540--Hb_004109_340 Hb_111036_010 Hb_111036_010 Hb_000120_540--Hb_111036_010 Hb_000392_430 Hb_000392_430 Hb_000120_540--Hb_000392_430 Hb_011628_060 Hb_011628_060 Hb_000120_540--Hb_011628_060 Hb_000302_310 Hb_000302_310 Hb_000120_540--Hb_000302_310 Hb_006502_030 Hb_006502_030 Hb_000029_090--Hb_006502_030 Hb_122548_010 Hb_122548_010 Hb_000029_090--Hb_122548_010 Hb_005686_120 Hb_005686_120 Hb_000029_090--Hb_005686_120 Hb_000622_200 Hb_000622_200 Hb_000029_090--Hb_000622_200 Hb_010789_020 Hb_010789_020 Hb_000029_090--Hb_010789_020 Hb_000261_240 Hb_000261_240 Hb_002232_320--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_002232_320--Hb_007657_020 Hb_003464_080 Hb_003464_080 Hb_002232_320--Hb_003464_080 Hb_000692_150 Hb_000692_150 Hb_002232_320--Hb_000692_150 Hb_002232_320--Hb_000302_310 Hb_000844_070 Hb_000844_070 Hb_002232_320--Hb_000844_070 Hb_001123_030--Hb_000302_310 Hb_000261_230 Hb_000261_230 Hb_001123_030--Hb_000261_230 Hb_001214_060 Hb_001214_060 Hb_001123_030--Hb_001214_060 Hb_011909_120 Hb_011909_120 Hb_001123_030--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_001123_030--Hb_000126_010 Hb_001123_030--Hb_022181_030 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_001769_080 Hb_001769_080 Hb_001025_110--Hb_001769_080 Hb_003641_060 Hb_003641_060 Hb_001025_110--Hb_003641_060 Hb_001025_110--Hb_022181_030 Hb_033834_030 Hb_033834_030 Hb_001025_110--Hb_033834_030 Hb_000785_080 Hb_000785_080 Hb_001025_110--Hb_000785_080 Hb_001025_110--Hb_000302_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.633187 0.778297 2.03116 1.94954 1.46408 2.02081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11716 1.5713 0.0997939 1.54297 0.444371

CAGE analysis