Hb_000139_490

Information

Type -
Description -
Location Contig139: 499238-500627
Sequence    

Annotation

kegg
ID rcu:RCOM_0912780
description DNA binding protein, putative
nr
ID XP_012069528.1
description PREDICTED: transcription factor MUTE [Jatropha curcas]
swissprot
ID Q9M8K6
description Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1
trembl
ID B9RTU1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0912780 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor mute

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_490 0.0 - - PREDICTED: transcription factor MUTE [Jatropha curcas]
2 Hb_157022_030 0.1723691185 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
3 Hb_000926_230 0.1729643024 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004162_230 0.2081191451 - - PREDICTED: histone H2B [Jatropha curcas]
5 Hb_002411_060 0.2122700115 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
6 Hb_003078_060 0.2192959841 - - 60S ribosomal protein L32, putative [Ricinus communis]
7 Hb_000029_100 0.2417907756 - - PREDICTED: nicalin-1-like isoform X2 [Populus euphratica]
8 Hb_009620_090 0.2505066835 - - hypothetical protein L484_000980 [Morus notabilis]
9 Hb_001329_190 0.2510799307 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_000742_190 0.2519549663 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000544_030 0.2527628101 - - conserved hypothetical protein [Ricinus communis]
12 Hb_074836_010 0.2531347462 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000948_200 0.2545107877 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_025214_120 0.2590802159 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
15 Hb_161294_010 0.2627914109 - - PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
16 Hb_010488_040 0.2632872601 - - PREDICTED: phosphomannomutase [Populus euphratica]
17 Hb_001016_010 0.2694890899 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002837_050 0.2703547714 - - hypothetical protein POPTR_0006s00550g [Populus trichocarpa]
19 Hb_001454_070 0.2709487449 - - Uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 1 [Theobroma cacao]
20 Hb_010789_020 0.2733359115 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]

Gene co-expression network

sample Hb_000139_490 Hb_000139_490 Hb_157022_030 Hb_157022_030 Hb_000139_490--Hb_157022_030 Hb_000926_230 Hb_000926_230 Hb_000139_490--Hb_000926_230 Hb_004162_230 Hb_004162_230 Hb_000139_490--Hb_004162_230 Hb_002411_060 Hb_002411_060 Hb_000139_490--Hb_002411_060 Hb_003078_060 Hb_003078_060 Hb_000139_490--Hb_003078_060 Hb_000029_100 Hb_000029_100 Hb_000139_490--Hb_000029_100 Hb_157022_030--Hb_004162_230 Hb_001329_190 Hb_001329_190 Hb_157022_030--Hb_001329_190 Hb_000556_130 Hb_000556_130 Hb_157022_030--Hb_000556_130 Hb_000663_070 Hb_000663_070 Hb_157022_030--Hb_000663_070 Hb_004449_040 Hb_004449_040 Hb_157022_030--Hb_004449_040 Hb_009620_090 Hb_009620_090 Hb_000926_230--Hb_009620_090 Hb_001005_160 Hb_001005_160 Hb_000926_230--Hb_001005_160 Hb_089140_120 Hb_089140_120 Hb_000926_230--Hb_089140_120 Hb_001545_050 Hb_001545_050 Hb_000926_230--Hb_001545_050 Hb_074836_010 Hb_074836_010 Hb_000926_230--Hb_074836_010 Hb_004162_230--Hb_002411_060 Hb_002307_020 Hb_002307_020 Hb_004162_230--Hb_002307_020 Hb_036790_030 Hb_036790_030 Hb_004162_230--Hb_036790_030 Hb_000739_270 Hb_000739_270 Hb_004162_230--Hb_000739_270 Hb_010998_050 Hb_010998_050 Hb_004162_230--Hb_010998_050 Hb_000684_120 Hb_000684_120 Hb_002411_060--Hb_000684_120 Hb_002411_060--Hb_004449_040 Hb_000345_260 Hb_000345_260 Hb_002411_060--Hb_000345_260 Hb_002837_050 Hb_002837_050 Hb_002411_060--Hb_002837_050 Hb_004117_190 Hb_004117_190 Hb_002411_060--Hb_004117_190 Hb_003078_060--Hb_157022_030 Hb_003078_060--Hb_004162_230 Hb_003078_060--Hb_000926_230 Hb_005679_080 Hb_005679_080 Hb_003078_060--Hb_005679_080 Hb_001431_110 Hb_001431_110 Hb_003078_060--Hb_001431_110 Hb_000029_090 Hb_000029_090 Hb_000029_100--Hb_000029_090 Hb_000029_100--Hb_000926_230 Hb_006769_010 Hb_006769_010 Hb_000029_100--Hb_006769_010 Hb_133724_010 Hb_133724_010 Hb_000029_100--Hb_133724_010 Hb_099878_050 Hb_099878_050 Hb_000029_100--Hb_099878_050 Hb_005686_120 Hb_005686_120 Hb_000029_100--Hb_005686_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103463 0.0533499 0.361969 0.338226 0 0.0926057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120719 0.0948509 0 0.0784188 0

CAGE analysis