Hb_000317_530

Information

Type -
Description -
Location Contig317: 414056-416753
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_530 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_000062_410 0.1438386392 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
3 Hb_000613_150 0.182225869 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
4 Hb_010422_080 0.2007792917 - - -
5 Hb_012163_030 0.2038645322 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
6 Hb_000031_040 0.2466122024 - - centromere protein O [Medicago truncatula]
7 Hb_000487_280 0.2576123447 - - -
8 Hb_001632_030 0.2777509742 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
9 Hb_000011_340 0.2782926011 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
10 Hb_026740_010 0.2786854528 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
11 Hb_001520_020 0.2790445361 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
12 Hb_096224_020 0.2904399251 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
13 Hb_000402_110 0.2944641273 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
14 Hb_002282_040 0.3079491366 - - hypothetical protein VITISV_030841 [Vitis vinifera]
15 Hb_004907_020 0.3120662199 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
16 Hb_116349_010 0.3191395569 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
17 Hb_008954_010 0.3271658105 - - -
18 Hb_000890_090 0.3279985433 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
19 Hb_001348_110 0.3364346551 - - PREDICTED: esterase-like [Jatropha curcas]
20 Hb_004931_010 0.3447115806 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_530 Hb_000317_530 Hb_000062_410 Hb_000062_410 Hb_000317_530--Hb_000062_410 Hb_000613_150 Hb_000613_150 Hb_000317_530--Hb_000613_150 Hb_010422_080 Hb_010422_080 Hb_000317_530--Hb_010422_080 Hb_012163_030 Hb_012163_030 Hb_000317_530--Hb_012163_030 Hb_000031_040 Hb_000031_040 Hb_000317_530--Hb_000031_040 Hb_000487_280 Hb_000487_280 Hb_000317_530--Hb_000487_280 Hb_000062_410--Hb_000031_040 Hb_000011_340 Hb_000011_340 Hb_000062_410--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_000062_410--Hb_001520_020 Hb_000062_410--Hb_000487_280 Hb_000062_410--Hb_012163_030 Hb_000613_150--Hb_012163_030 Hb_001632_030 Hb_001632_030 Hb_000613_150--Hb_001632_030 Hb_000402_110 Hb_000402_110 Hb_000613_150--Hb_000402_110 Hb_003124_180 Hb_003124_180 Hb_000613_150--Hb_003124_180 Hb_026740_010 Hb_026740_010 Hb_000613_150--Hb_026740_010 Hb_116349_010 Hb_116349_010 Hb_010422_080--Hb_116349_010 Hb_010422_080--Hb_000487_280 Hb_002983_060 Hb_002983_060 Hb_010422_080--Hb_002983_060 Hb_010422_080--Hb_000011_340 Hb_010422_080--Hb_000062_410 Hb_008954_010 Hb_008954_010 Hb_012163_030--Hb_008954_010 Hb_006588_010 Hb_006588_010 Hb_012163_030--Hb_006588_010 Hb_001348_110 Hb_001348_110 Hb_012163_030--Hb_001348_110 Hb_000804_030 Hb_000804_030 Hb_012163_030--Hb_000804_030 Hb_000031_040--Hb_010422_080 Hb_000031_040--Hb_000487_280 Hb_001959_300 Hb_001959_300 Hb_000031_040--Hb_001959_300 Hb_000395_060 Hb_000395_060 Hb_000031_040--Hb_000395_060 Hb_000487_280--Hb_000011_340 Hb_000487_280--Hb_001520_020 Hb_000487_280--Hb_116349_010 Hb_000487_280--Hb_008954_010 Hb_000487_280--Hb_001348_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0110963 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0321926 0.0253264 0 0.0202261 0

CAGE analysis