Hb_000031_040

Information

Type -
Description -
Location Contig31: 40688-44678
Sequence    

Annotation

kegg
ID rcu:RCOM_0918390
description hypothetical protein
nr
ID KEH35954.1
description centromere protein O [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072V1R6
description Centromere protein O OS=Medicago truncatula GN=MTR_3g108805 PE=4 SV=1
Gene Ontology
ID GO:0000776
description centromere protein o

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32771: 44827-44948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_040 0.0 - - centromere protein O [Medicago truncatula]
2 Hb_000062_410 0.2357879413 - - PREDICTED: uncharacterized protein LOC105644766 [Jatropha curcas]
3 Hb_000317_530 0.2466122024 - - hypothetical protein, partial [Pseudomonas fluorescens]
4 Hb_010422_080 0.302037415 - - -
5 Hb_000487_280 0.3027716815 - - -
6 Hb_001959_300 0.3085325191 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
7 Hb_000395_060 0.3133544624 - - -
8 Hb_000107_640 0.317144226 - - conserved hypothetical protein [Ricinus communis]
9 Hb_175572_010 0.317464846 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_001232_120 0.3329884853 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
11 Hb_096224_020 0.3380548153 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
12 Hb_000011_340 0.3440731183 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
13 Hb_001520_020 0.3450085253 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
14 Hb_007181_010 0.3571600103 - - polyphenol oxidase [Hevea brasiliensis]
15 Hb_116349_010 0.3591498995 - - PREDICTED: uncharacterized protein LOC105763153 [Gossypium raimondii]
16 Hb_004907_020 0.360319738 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
17 Hb_001916_080 0.3606012493 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
18 Hb_003994_170 0.3639186547 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
19 Hb_002636_020 0.3647394353 - - -
20 Hb_001080_110 0.3674483766 - - -

Gene co-expression network

sample Hb_000031_040 Hb_000031_040 Hb_000062_410 Hb_000062_410 Hb_000031_040--Hb_000062_410 Hb_000317_530 Hb_000317_530 Hb_000031_040--Hb_000317_530 Hb_010422_080 Hb_010422_080 Hb_000031_040--Hb_010422_080 Hb_000487_280 Hb_000487_280 Hb_000031_040--Hb_000487_280 Hb_001959_300 Hb_001959_300 Hb_000031_040--Hb_001959_300 Hb_000395_060 Hb_000395_060 Hb_000031_040--Hb_000395_060 Hb_000062_410--Hb_000317_530 Hb_000011_340 Hb_000011_340 Hb_000062_410--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_000062_410--Hb_001520_020 Hb_000062_410--Hb_000487_280 Hb_012163_030 Hb_012163_030 Hb_000062_410--Hb_012163_030 Hb_000613_150 Hb_000613_150 Hb_000317_530--Hb_000613_150 Hb_000317_530--Hb_010422_080 Hb_000317_530--Hb_012163_030 Hb_000317_530--Hb_000487_280 Hb_116349_010 Hb_116349_010 Hb_010422_080--Hb_116349_010 Hb_010422_080--Hb_000487_280 Hb_002983_060 Hb_002983_060 Hb_010422_080--Hb_002983_060 Hb_010422_080--Hb_000011_340 Hb_010422_080--Hb_000062_410 Hb_000487_280--Hb_000011_340 Hb_000487_280--Hb_001520_020 Hb_000487_280--Hb_116349_010 Hb_008954_010 Hb_008954_010 Hb_000487_280--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_000487_280--Hb_001348_110 Hb_001959_300--Hb_000395_060 Hb_003963_020 Hb_003963_020 Hb_001959_300--Hb_003963_020 Hb_012807_010 Hb_012807_010 Hb_001959_300--Hb_012807_010 Hb_005009_020 Hb_005009_020 Hb_001959_300--Hb_005009_020 Hb_007409_020 Hb_007409_020 Hb_001959_300--Hb_007409_020 Hb_004691_040 Hb_004691_040 Hb_001959_300--Hb_004691_040 Hb_005408_040 Hb_005408_040 Hb_000395_060--Hb_005408_040 Hb_000107_640 Hb_000107_640 Hb_000395_060--Hb_000107_640 Hb_175572_010 Hb_175572_010 Hb_000395_060--Hb_175572_010 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_000395_060--Hb_005009_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0516719 0 0 0.0601515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313673 0.123194 0 0.206891 0

CAGE analysis