Hb_000504_110

Information

Type -
Description -
Location Contig504: 126664-128142
Sequence    

Annotation

kegg
ID rcu:RCOM_1064470
description F-box/LRR-repeat protein, putative
nr
ID XP_002521466.1
description F-box/LRR-repeat protein, putative [Ricinus communis]
swissprot
ID Q9C5D2
description F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1
trembl
ID B9S647
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_1064470 PE=4 SV=1
Gene Ontology
ID GO:0031348
description f-box lrr-repeat protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45942: 126844-127163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_110 0.0 - - F-box/LRR-repeat protein, putative [Ricinus communis]
2 Hb_002043_110 0.2099386928 - - hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
3 Hb_001675_030 0.23889643 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003687_030 0.2428241824 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_000307_120 0.2522665765 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_005363_010 0.256731506 - - hypothetical protein JCGZ_13835 [Jatropha curcas]
7 Hb_004724_450 0.2588018204 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
8 Hb_004116_130 0.2641192894 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
9 Hb_007951_130 0.2661885987 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
10 Hb_001117_120 0.2693503378 - - chloride channel clc, putative [Ricinus communis]
11 Hb_007317_080 0.2716250774 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
12 Hb_000886_030 0.2726062045 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
13 Hb_007849_010 0.2767303236 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
14 Hb_001828_030 0.2835017328 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_118094_010 0.2844602566 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
16 Hb_140049_010 0.2846877316 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
17 Hb_002686_120 0.2889360785 - - short-chain type dehydrogenase, putative [Ricinus communis]
18 Hb_003020_180 0.2901960019 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
19 Hb_002035_110 0.2902527424 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
20 Hb_009736_010 0.2906054366 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000504_110 Hb_000504_110 Hb_002043_110 Hb_002043_110 Hb_000504_110--Hb_002043_110 Hb_001675_030 Hb_001675_030 Hb_000504_110--Hb_001675_030 Hb_003687_030 Hb_003687_030 Hb_000504_110--Hb_003687_030 Hb_000307_120 Hb_000307_120 Hb_000504_110--Hb_000307_120 Hb_005363_010 Hb_005363_010 Hb_000504_110--Hb_005363_010 Hb_004724_450 Hb_004724_450 Hb_000504_110--Hb_004724_450 Hb_001828_030 Hb_001828_030 Hb_002043_110--Hb_001828_030 Hb_007317_080 Hb_007317_080 Hb_002043_110--Hb_007317_080 Hb_026747_020 Hb_026747_020 Hb_002043_110--Hb_026747_020 Hb_001022_040 Hb_001022_040 Hb_002043_110--Hb_001022_040 Hb_021888_120 Hb_021888_120 Hb_002043_110--Hb_021888_120 Hb_172632_050 Hb_172632_050 Hb_001675_030--Hb_172632_050 Hb_001675_030--Hb_003687_030 Hb_000529_280 Hb_000529_280 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_028707_070 Hb_028707_070 Hb_001675_030--Hb_028707_070 Hb_001728_020 Hb_001728_020 Hb_001675_030--Hb_001728_020 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_003687_030--Hb_001728_020 Hb_003687_030--Hb_172632_050 Hb_003687_030--Hb_028707_070 Hb_003687_030--Hb_000529_280 Hb_062785_010 Hb_062785_010 Hb_000307_120--Hb_062785_010 Hb_000307_120--Hb_005363_010 Hb_124996_010 Hb_124996_010 Hb_000307_120--Hb_124996_010 Hb_002094_070 Hb_002094_070 Hb_000307_120--Hb_002094_070 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000162_220 Hb_000162_220 Hb_000307_120--Hb_000162_220 Hb_001221_520 Hb_001221_520 Hb_005363_010--Hb_001221_520 Hb_005363_010--Hb_118094_010 Hb_001507_030 Hb_001507_030 Hb_005363_010--Hb_001507_030 Hb_001999_240 Hb_001999_240 Hb_005363_010--Hb_001999_240 Hb_003020_180 Hb_003020_180 Hb_005363_010--Hb_003020_180 Hb_004899_310 Hb_004899_310 Hb_005363_010--Hb_004899_310 Hb_009736_010 Hb_009736_010 Hb_004724_450--Hb_009736_010 Hb_002835_340 Hb_002835_340 Hb_004724_450--Hb_002835_340 Hb_000110_380 Hb_000110_380 Hb_004724_450--Hb_000110_380 Hb_005408_070 Hb_005408_070 Hb_004724_450--Hb_005408_070 Hb_003592_030 Hb_003592_030 Hb_004724_450--Hb_003592_030 Hb_001170_010 Hb_001170_010 Hb_004724_450--Hb_001170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.44549 0.492949 3.48689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87235 2.84669 0.14067 3.13038 0.261048

CAGE analysis