Hb_002094_070

Information

Type -
Description -
Location Contig2094: 81180-83022
Sequence    

Annotation

kegg
ID rcu:RCOM_0987060
description Organic cation transporter, putative
nr
ID XP_002530918.1
description Organic cation transporter, putative [Ricinus communis]
swissprot
ID Q9LHQ6
description Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1
trembl
ID B9SY49
description Organic cation transporter, putative OS=Ricinus communis GN=RCOM_0987060 PE=4 SV=1
Gene Ontology
ID GO:0009535
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002094_070 0.0 - - Organic cation transporter, putative [Ricinus communis]
2 Hb_062785_010 0.1128107732 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_011724_030 0.2248112622 - - Organic cation transporter, putative [Ricinus communis]
4 Hb_002217_520 0.2370691082 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
5 Hb_000307_120 0.2398105049 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_001117_120 0.248150801 - - chloride channel clc, putative [Ricinus communis]
7 Hb_007218_160 0.2577695768 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
8 Hb_009986_010 0.2588993638 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000023_250 0.2642767939 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
10 Hb_003687_030 0.2761755765 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_001153_180 0.2799772679 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_005779_040 0.2841747305 - - -
13 Hb_011909_140 0.2878732289 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
14 Hb_004837_150 0.291347711 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
15 Hb_004116_130 0.2933940946 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
16 Hb_028707_070 0.2961474382 - - short-chain dehydrogenase, putative [Ricinus communis]
17 Hb_097218_020 0.3004083073 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
18 Hb_000684_050 0.3020215011 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
19 Hb_001860_010 0.3049041446 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_000061_120 0.3051024349 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]

Gene co-expression network

sample Hb_002094_070 Hb_002094_070 Hb_062785_010 Hb_062785_010 Hb_002094_070--Hb_062785_010 Hb_011724_030 Hb_011724_030 Hb_002094_070--Hb_011724_030 Hb_002217_520 Hb_002217_520 Hb_002094_070--Hb_002217_520 Hb_000307_120 Hb_000307_120 Hb_002094_070--Hb_000307_120 Hb_001117_120 Hb_001117_120 Hb_002094_070--Hb_001117_120 Hb_007218_160 Hb_007218_160 Hb_002094_070--Hb_007218_160 Hb_062785_010--Hb_000307_120 Hb_062785_010--Hb_011724_030 Hb_062785_010--Hb_002217_520 Hb_062785_010--Hb_001117_120 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_031474_030 Hb_031474_030 Hb_011724_030--Hb_031474_030 Hb_011724_030--Hb_002217_520 Hb_011724_030--Hb_001117_120 Hb_000331_520 Hb_000331_520 Hb_011724_030--Hb_000331_520 Hb_002217_520--Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_002217_520--Hb_097218_020 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_005363_010 Hb_005363_010 Hb_000307_120--Hb_005363_010 Hb_124996_010 Hb_124996_010 Hb_000307_120--Hb_124996_010 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000162_220 Hb_000162_220 Hb_000307_120--Hb_000162_220 Hb_001117_120--Hb_097218_020 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_000684_050 Hb_000684_050 Hb_007218_160--Hb_000684_050 Hb_004837_150 Hb_004837_150 Hb_007218_160--Hb_004837_150 Hb_001123_150 Hb_001123_150 Hb_007218_160--Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_007218_160--Hb_006816_480 Hb_001230_030 Hb_001230_030 Hb_007218_160--Hb_001230_030 Hb_000331_510 Hb_000331_510 Hb_007218_160--Hb_000331_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67635 11.9668 2.52069 4.6028 0.0893388 0.161055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0238 4.27479 0 3.25744 5.72885

CAGE analysis