Hb_001117_120

Information

Type -
Description -
Location Contig1117: 85464-104245
Sequence    

Annotation

kegg
ID rcu:RCOM_0497360
description chloride channel clc, putative
nr
ID XP_002527858.1
description chloride channel clc, putative [Ricinus communis]
swissprot
ID Q96282
description Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1
trembl
ID B9SPD9
description Chloride channel protein OS=Ricinus communis GN=RCOM_0497360 PE=3 SV=1
Gene Ontology
ID GO:0009705
description chloride channel protein clc-c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03537: 96900-104099 , PASA_asmbl_03538: 97659-98188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_120 0.0 - - chloride channel clc, putative [Ricinus communis]
2 Hb_097218_020 0.1526878012 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
3 Hb_002217_520 0.1808611673 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
4 Hb_003687_030 0.2202139289 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_062785_010 0.2299887794 - - Organic cation transporter, putative [Ricinus communis]
6 Hb_000318_080 0.2421237401 - - PREDICTED: la-related protein 6C [Jatropha curcas]
7 Hb_139138_010 0.2427385953 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
8 Hb_028707_070 0.243115689 - - short-chain dehydrogenase, putative [Ricinus communis]
9 Hb_124996_010 0.2473378158 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
10 Hb_002094_070 0.248150801 - - Organic cation transporter, putative [Ricinus communis]
11 Hb_000886_030 0.2515306809 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
12 Hb_000139_470 0.2568879291 - - Dual specificity protein phosphatase, putative [Ricinus communis]
13 Hb_012807_130 0.257067713 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
14 Hb_007951_130 0.2617412855 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
15 Hb_000007_200 0.2634677757 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
16 Hb_015586_010 0.2660049786 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
17 Hb_003462_160 0.2663504988 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
18 Hb_001221_560 0.2664766667 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
19 Hb_001675_030 0.2675865299 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001376_060 0.2693475897 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_120 Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_001117_120--Hb_097218_020 Hb_002217_520 Hb_002217_520 Hb_001117_120--Hb_002217_520 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_062785_010 Hb_062785_010 Hb_001117_120--Hb_062785_010 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010 Hb_097218_020--Hb_002217_520 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_003673_040 Hb_003673_040 Hb_097218_020--Hb_003673_040 Hb_021079_010 Hb_021079_010 Hb_097218_020--Hb_021079_010 Hb_002217_520--Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_002217_520--Hb_002094_070 Hb_011724_030 Hb_011724_030 Hb_002217_520--Hb_011724_030 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280 Hb_062785_010--Hb_002094_070 Hb_000307_120 Hb_000307_120 Hb_062785_010--Hb_000307_120 Hb_062785_010--Hb_011724_030 Hb_009986_010 Hb_009986_010 Hb_062785_010--Hb_009986_010 Hb_052764_070 Hb_052764_070 Hb_000318_080--Hb_052764_070 Hb_000318_080--Hb_097218_020 Hb_000007_200 Hb_000007_200 Hb_000318_080--Hb_000007_200 Hb_118094_010 Hb_118094_010 Hb_000318_080--Hb_118094_010 Hb_001767_060 Hb_001767_060 Hb_000318_080--Hb_001767_060 Hb_000318_080--Hb_000886_030 Hb_007951_130 Hb_007951_130 Hb_139138_010--Hb_007951_130 Hb_005147_010 Hb_005147_010 Hb_139138_010--Hb_005147_010 Hb_011909_140 Hb_011909_140 Hb_139138_010--Hb_011909_140 Hb_000483_480 Hb_000483_480 Hb_139138_010--Hb_000483_480 Hb_128051_010 Hb_128051_010 Hb_139138_010--Hb_128051_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00849956 1.48185 0.885907 1.47181 0.019881 0.0344001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.82942 2.7493 0.0582615 0.956495 1.36532

CAGE analysis