Hb_005147_010

Information

Type -
Description -
Location Contig5147: 5368-7499
Sequence    

Annotation

kegg
ID rcu:RCOM_0758890
description ATP binding protein, putative
nr
ID XP_012066682.1
description PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00248 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46466: 5420-5681 , PASA_asmbl_46467: 5749-7680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_010 0.0 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
2 Hb_183612_060 0.1746393639 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
3 Hb_061195_020 0.2019200117 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
4 Hb_139138_010 0.2040736702 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
5 Hb_011909_140 0.207298902 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
6 Hb_001199_040 0.2081542631 - - unnamed protein product [Coffea canephora]
7 Hb_005015_030 0.2121244503 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
8 Hb_003020_150 0.2227316856 - - tropinone reductase, putative [Ricinus communis]
9 Hb_002260_010 0.2252491112 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
10 Hb_098533_020 0.2302165628 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
11 Hb_000465_230 0.2305771846 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
12 Hb_000997_190 0.2308335487 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
13 Hb_008226_080 0.2338847732 - - Protein LRP16, putative [Ricinus communis]
14 Hb_147752_010 0.2340044752 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
15 Hb_000152_100 0.2344012486 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
16 Hb_004567_020 0.2344484317 - - Small ubiquitin-related modifier 2 [Morus notabilis]
17 Hb_013399_050 0.2348682279 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
18 Hb_000465_510 0.2354026625 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
19 Hb_001488_370 0.241912922 - - Esterase PIR7B, putative [Ricinus communis]
20 Hb_006256_030 0.2421872607 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]

Gene co-expression network

sample Hb_005147_010 Hb_005147_010 Hb_183612_060 Hb_183612_060 Hb_005147_010--Hb_183612_060 Hb_061195_020 Hb_061195_020 Hb_005147_010--Hb_061195_020 Hb_139138_010 Hb_139138_010 Hb_005147_010--Hb_139138_010 Hb_011909_140 Hb_011909_140 Hb_005147_010--Hb_011909_140 Hb_001199_040 Hb_001199_040 Hb_005147_010--Hb_001199_040 Hb_005015_030 Hb_005015_030 Hb_005147_010--Hb_005015_030 Hb_003020_150 Hb_003020_150 Hb_183612_060--Hb_003020_150 Hb_002260_010 Hb_002260_010 Hb_183612_060--Hb_002260_010 Hb_006256_030 Hb_006256_030 Hb_183612_060--Hb_006256_030 Hb_002232_060 Hb_002232_060 Hb_183612_060--Hb_002232_060 Hb_013399_050 Hb_013399_050 Hb_183612_060--Hb_013399_050 Hb_000997_190 Hb_000997_190 Hb_183612_060--Hb_000997_190 Hb_015807_100 Hb_015807_100 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_000465_230 Hb_000465_230 Hb_061195_020--Hb_000465_230 Hb_007850_080 Hb_007850_080 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_033642_080 Hb_033642_080 Hb_061195_020--Hb_033642_080 Hb_007951_130 Hb_007951_130 Hb_139138_010--Hb_007951_130 Hb_139138_010--Hb_011909_140 Hb_001117_120 Hb_001117_120 Hb_139138_010--Hb_001117_120 Hb_000483_480 Hb_000483_480 Hb_139138_010--Hb_000483_480 Hb_128051_010 Hb_128051_010 Hb_139138_010--Hb_128051_010 Hb_001153_180 Hb_001153_180 Hb_011909_140--Hb_001153_180 Hb_002701_220 Hb_002701_220 Hb_011909_140--Hb_002701_220 Hb_000891_030 Hb_000891_030 Hb_011909_140--Hb_000891_030 Hb_000451_070 Hb_000451_070 Hb_011909_140--Hb_000451_070 Hb_088753_010 Hb_088753_010 Hb_011909_140--Hb_088753_010 Hb_011909_140--Hb_061195_020 Hb_008226_080 Hb_008226_080 Hb_001199_040--Hb_008226_080 Hb_000057_140 Hb_000057_140 Hb_001199_040--Hb_000057_140 Hb_001199_040--Hb_061195_020 Hb_001199_040--Hb_007850_080 Hb_004453_080 Hb_004453_080 Hb_001199_040--Hb_004453_080 Hb_001199_040--Hb_000465_230 Hb_002811_080 Hb_002811_080 Hb_005015_030--Hb_002811_080 Hb_006478_160 Hb_006478_160 Hb_005015_030--Hb_006478_160 Hb_000975_320 Hb_000975_320 Hb_005015_030--Hb_000975_320 Hb_000731_190 Hb_000731_190 Hb_005015_030--Hb_000731_190 Hb_005015_030--Hb_002260_010 Hb_001172_120 Hb_001172_120 Hb_005015_030--Hb_001172_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121696 3.37729 1.46646 0.508122 0.0406843 0.360373
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.87679 6.13126 2.36168 1.21615 1.20042

CAGE analysis