Hb_153269_010

Information

Type -
Description -
Location Contig153269: 534-1146
Sequence    

Annotation

kegg
ID cic:CICLE_v10029937mg
description hypothetical protein
nr
ID XP_006424210.1
description hypothetical protein CICLE_v10029937mg [Citrus clementina]
swissprot
ID Q652P9
description Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1
trembl
ID V4SF27
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029937mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein 9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153269_010 0.0 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
2 Hb_001376_060 0.1873679307 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
3 Hb_003181_060 0.1937555644 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
4 Hb_097218_020 0.1980627894 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
5 Hb_000018_140 0.2044427689 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
6 Hb_003673_040 0.2156702772 - - dynamin family protein [Populus trichocarpa]
7 Hb_027298_030 0.224005478 - - PREDICTED: histone H1-like [Jatropha curcas]
8 Hb_001322_230 0.2256920029 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_000032_140 0.2298652748 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001269_470 0.2325437361 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
11 Hb_052764_070 0.2331314987 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
12 Hb_001863_070 0.2374654372 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
13 Hb_001767_060 0.238500415 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000723_340 0.2387048741 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
15 Hb_002631_300 0.2387913078 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
16 Hb_000946_060 0.2396458903 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like isoform X2 [Jatropha curcas]
17 Hb_007904_040 0.2398845626 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
18 Hb_000176_150 0.2399339363 - - PREDICTED: lactation elevated protein 1 isoform X2 [Jatropha curcas]
19 Hb_012851_020 0.240318549 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_002016_140 0.2405303037 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_153269_010 Hb_153269_010 Hb_001376_060 Hb_001376_060 Hb_153269_010--Hb_001376_060 Hb_003181_060 Hb_003181_060 Hb_153269_010--Hb_003181_060 Hb_097218_020 Hb_097218_020 Hb_153269_010--Hb_097218_020 Hb_000018_140 Hb_000018_140 Hb_153269_010--Hb_000018_140 Hb_003673_040 Hb_003673_040 Hb_153269_010--Hb_003673_040 Hb_027298_030 Hb_027298_030 Hb_153269_010--Hb_027298_030 Hb_012725_120 Hb_012725_120 Hb_001376_060--Hb_012725_120 Hb_003040_040 Hb_003040_040 Hb_001376_060--Hb_003040_040 Hb_005656_170 Hb_005656_170 Hb_001376_060--Hb_005656_170 Hb_015807_160 Hb_015807_160 Hb_001376_060--Hb_015807_160 Hb_003462_160 Hb_003462_160 Hb_001376_060--Hb_003462_160 Hb_003462_180 Hb_003462_180 Hb_001376_060--Hb_003462_180 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550 Hb_001117_120 Hb_001117_120 Hb_097218_020--Hb_001117_120 Hb_002217_520 Hb_002217_520 Hb_097218_020--Hb_002217_520 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_097218_020--Hb_003673_040 Hb_097218_020--Hb_021079_010 Hb_000176_150 Hb_000176_150 Hb_000018_140--Hb_000176_150 Hb_086122_010 Hb_086122_010 Hb_000018_140--Hb_086122_010 Hb_000270_280 Hb_000270_280 Hb_000018_140--Hb_000270_280 Hb_004648_030 Hb_004648_030 Hb_000018_140--Hb_004648_030 Hb_001842_020 Hb_001842_020 Hb_000018_140--Hb_001842_020 Hb_056196_010 Hb_056196_010 Hb_000018_140--Hb_056196_010 Hb_003673_040--Hb_021079_010 Hb_000330_030 Hb_000330_030 Hb_003673_040--Hb_000330_030 Hb_003673_040--Hb_027298_030 Hb_003673_040--Hb_003181_060 Hb_002631_300 Hb_002631_300 Hb_003673_040--Hb_002631_300 Hb_027298_030--Hb_021079_010 Hb_004317_030 Hb_004317_030 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447878 0.175684 0.565795 0.325711 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208144 0.490729 0 0.167912 0.473274

CAGE analysis