Hb_056196_010

Information

Type -
Description -
Location Contig56196: 1441-2322
Sequence    

Annotation

kegg
ID tcc:TCM_028908
description Oxidative stress 3, putative isoform 1
nr
ID XP_011000943.1
description PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061GC09
description Oxidative stress 3, putative isoform 1 OS=Theobroma cacao GN=TCM_028908 PE=4 SV=1
Gene Ontology
ID GO:0050896
description oxidative stress isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48844: 1515-2097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_010 0.0 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
2 Hb_002716_110 0.1527195336 - - PREDICTED: interaptin [Jatropha curcas]
3 Hb_000679_030 0.1535525765 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5 [Jatropha curcas]
4 Hb_001014_020 0.166036824 - - gene GA family protein [Populus trichocarpa]
5 Hb_074109_010 0.1754571202 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
6 Hb_019762_060 0.1826701972 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000018_140 0.1833239803 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
8 Hb_005488_130 0.1900500028 - - transporter, putative [Ricinus communis]
9 Hb_011310_180 0.190873856 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
10 Hb_010638_010 0.1918039044 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
11 Hb_000069_690 0.1923201631 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
12 Hb_002010_050 0.1929657257 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003688_140 0.1933962141 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
14 Hb_000032_510 0.1945288023 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]
15 Hb_000457_250 0.1956674257 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_002397_050 0.1966043328 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
17 Hb_000252_260 0.1974436314 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_002835_280 0.1996131152 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
19 Hb_001619_090 0.1998452827 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_000181_330 0.2004400249 - - ubiquitin ligase protein cop1, putative [Ricinus communis]

Gene co-expression network

sample Hb_056196_010 Hb_056196_010 Hb_002716_110 Hb_002716_110 Hb_056196_010--Hb_002716_110 Hb_000679_030 Hb_000679_030 Hb_056196_010--Hb_000679_030 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_019762_060 Hb_019762_060 Hb_056196_010--Hb_019762_060 Hb_000018_140 Hb_000018_140 Hb_056196_010--Hb_000018_140 Hb_002716_110--Hb_000679_030 Hb_002397_050 Hb_002397_050 Hb_002716_110--Hb_002397_050 Hb_005493_010 Hb_005493_010 Hb_002716_110--Hb_005493_010 Hb_002817_050 Hb_002817_050 Hb_002716_110--Hb_002817_050 Hb_003688_140 Hb_003688_140 Hb_002716_110--Hb_003688_140 Hb_000054_030 Hb_000054_030 Hb_002716_110--Hb_000054_030 Hb_005488_130 Hb_005488_130 Hb_000679_030--Hb_005488_130 Hb_164945_020 Hb_164945_020 Hb_000679_030--Hb_164945_020 Hb_000069_690 Hb_000069_690 Hb_000679_030--Hb_000069_690 Hb_000679_030--Hb_002397_050 Hb_000320_390 Hb_000320_390 Hb_001014_020--Hb_000320_390 Hb_020141_030 Hb_020141_030 Hb_001014_020--Hb_020141_030 Hb_003018_150 Hb_003018_150 Hb_001014_020--Hb_003018_150 Hb_000127_100 Hb_000127_100 Hb_001014_020--Hb_000127_100 Hb_002811_050 Hb_002811_050 Hb_001014_020--Hb_002811_050 Hb_091433_050 Hb_091433_050 Hb_001014_020--Hb_091433_050 Hb_000005_100 Hb_000005_100 Hb_074109_010--Hb_000005_100 Hb_074109_010--Hb_003688_140 Hb_003055_070 Hb_003055_070 Hb_074109_010--Hb_003055_070 Hb_004648_030 Hb_004648_030 Hb_074109_010--Hb_004648_030 Hb_000834_060 Hb_000834_060 Hb_074109_010--Hb_000834_060 Hb_004223_270 Hb_004223_270 Hb_074109_010--Hb_004223_270 Hb_000203_200 Hb_000203_200 Hb_019762_060--Hb_000203_200 Hb_000086_320 Hb_000086_320 Hb_019762_060--Hb_000086_320 Hb_019762_060--Hb_000018_140 Hb_001959_250 Hb_001959_250 Hb_019762_060--Hb_001959_250 Hb_019762_060--Hb_000679_030 Hb_000176_150 Hb_000176_150 Hb_000018_140--Hb_000176_150 Hb_086122_010 Hb_086122_010 Hb_000018_140--Hb_086122_010 Hb_000270_280 Hb_000270_280 Hb_000018_140--Hb_000270_280 Hb_000018_140--Hb_004648_030 Hb_001842_020 Hb_001842_020 Hb_000018_140--Hb_001842_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.17566 3.74891 3.38164 0.0321928 0.0805397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25556 1.10328 0 0.47123 4.74536

CAGE analysis