Hb_001959_250

Information

Type -
Description -
Location Contig1959: 217938-236151
Sequence    

Annotation

kegg
ID crb:CARUB_v10015435mg
description hypothetical protein
nr
ID XP_006299281.1
description hypothetical protein CARUB_v10015435mg [Capsella rubella]
swissprot
ID A7NPT5
description DNA mismatch repair protein MutS OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=mutS PE=3 SV=1
trembl
ID R0HQW7
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10015435mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna mismatch repair protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001959_250 0.0 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
2 Hb_019762_060 0.2431152439 - - conserved hypothetical protein [Ricinus communis]
3 Hb_015586_010 0.2497190548 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
4 Hb_001936_170 0.2580828458 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002217_520 0.2630611375 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]
6 Hb_056196_010 0.2701904411 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
7 Hb_010638_010 0.2765215619 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
8 Hb_000018_140 0.2792953263 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
9 Hb_011310_180 0.2885460378 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
10 Hb_004545_010 0.3060043509 - - acyl carrier protein [Ricinus communis]
11 Hb_153269_010 0.3069616536 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
12 Hb_000032_140 0.3084947568 - - conserved hypothetical protein [Ricinus communis]
13 Hb_090065_010 0.3123382651 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_001117_120 0.3132792643 - - chloride channel clc, putative [Ricinus communis]
15 Hb_004883_010 0.3138749741 - - hypothetical protein JCGZ_23144 [Jatropha curcas]
16 Hb_052764_070 0.3148956216 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
17 Hb_097218_020 0.3156301824 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
18 Hb_079513_010 0.3159080659 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
19 Hb_007904_040 0.3191169287 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
20 Hb_000077_170 0.3201519452 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]

Gene co-expression network

sample Hb_001959_250 Hb_001959_250 Hb_019762_060 Hb_019762_060 Hb_001959_250--Hb_019762_060 Hb_015586_010 Hb_015586_010 Hb_001959_250--Hb_015586_010 Hb_001936_170 Hb_001936_170 Hb_001959_250--Hb_001936_170 Hb_002217_520 Hb_002217_520 Hb_001959_250--Hb_002217_520 Hb_056196_010 Hb_056196_010 Hb_001959_250--Hb_056196_010 Hb_010638_010 Hb_010638_010 Hb_001959_250--Hb_010638_010 Hb_019762_060--Hb_056196_010 Hb_000203_200 Hb_000203_200 Hb_019762_060--Hb_000203_200 Hb_000086_320 Hb_000086_320 Hb_019762_060--Hb_000086_320 Hb_000018_140 Hb_000018_140 Hb_019762_060--Hb_000018_140 Hb_000679_030 Hb_000679_030 Hb_019762_060--Hb_000679_030 Hb_090065_010 Hb_090065_010 Hb_015586_010--Hb_090065_010 Hb_118094_010 Hb_118094_010 Hb_015586_010--Hb_118094_010 Hb_001584_030 Hb_001584_030 Hb_015586_010--Hb_001584_030 Hb_002157_090 Hb_002157_090 Hb_015586_010--Hb_002157_090 Hb_009976_010 Hb_009976_010 Hb_015586_010--Hb_009976_010 Hb_004883_010 Hb_004883_010 Hb_001936_170--Hb_004883_010 Hb_005615_060 Hb_005615_060 Hb_001936_170--Hb_005615_060 Hb_002081_170 Hb_002081_170 Hb_001936_170--Hb_002081_170 Hb_000431_120 Hb_000431_120 Hb_001936_170--Hb_000431_120 Hb_006452_230 Hb_006452_230 Hb_001936_170--Hb_006452_230 Hb_001117_120 Hb_001117_120 Hb_002217_520--Hb_001117_120 Hb_097218_020 Hb_097218_020 Hb_002217_520--Hb_097218_020 Hb_062785_010 Hb_062785_010 Hb_002217_520--Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_002217_520--Hb_002094_070 Hb_011724_030 Hb_011724_030 Hb_002217_520--Hb_011724_030 Hb_010672_030 Hb_010672_030 Hb_002217_520--Hb_010672_030 Hb_002716_110 Hb_002716_110 Hb_056196_010--Hb_002716_110 Hb_056196_010--Hb_000679_030 Hb_001014_020 Hb_001014_020 Hb_056196_010--Hb_001014_020 Hb_074109_010 Hb_074109_010 Hb_056196_010--Hb_074109_010 Hb_056196_010--Hb_000018_140 Hb_001379_120 Hb_001379_120 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_001163_110 Hb_001163_110 Hb_010638_010--Hb_001163_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0146023 0.0352465 0.0329772 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0536454 0.0211078 0 0 0.0450942

CAGE analysis