Hb_005615_060

Information

Type -
Description -
Location Contig5615: 88717-89352
Sequence    

Annotation

kegg
ID vvi:104877459
description uncharacterized LOC104877459
nr
ID XP_012075485.1
description PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID Q2HS44
description Hemopexin OS=Medicago truncatula GN=MtrDRAFT_AC157503g5v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005615_060 0.0 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
2 Hb_065858_010 0.2439129383 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_001936_170 0.2984703806 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000449_060 0.3071750507 - - -
5 Hb_015807_110 0.3089024505 - - thioredoxin h [Hevea brasiliensis]
6 Hb_031474_030 0.3093750658 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_011724_030 0.3221946546 - - Organic cation transporter, putative [Ricinus communis]
8 Hb_094852_010 0.3236005705 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_006351_070 0.3314029793 - - heat-shock protein, putative [Ricinus communis]
10 Hb_178654_020 0.340527621 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_124621_010 0.3411993656 - - hypothetical protein L484_019698 [Morus notabilis]
12 Hb_000175_580 0.3545249731 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
13 Hb_000566_020 0.3574814206 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
14 Hb_008879_010 0.3637987264 - - Beta-ureidopropionase, putative [Ricinus communis]
15 Hb_002094_050 0.3638947938 - - PREDICTED: organic cation/carnitine transporter 4-like, partial [Eucalyptus grandis]
16 Hb_000310_070 0.3683019713 - - BnaA06g08330D [Brassica napus]
17 Hb_141408_010 0.3713830548 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
18 Hb_000258_100 0.3783691768 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001959_250 0.3805323861 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
20 Hb_002081_170 0.3813919108 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005615_060 Hb_005615_060 Hb_065858_010 Hb_065858_010 Hb_005615_060--Hb_065858_010 Hb_001936_170 Hb_001936_170 Hb_005615_060--Hb_001936_170 Hb_000449_060 Hb_000449_060 Hb_005615_060--Hb_000449_060 Hb_015807_110 Hb_015807_110 Hb_005615_060--Hb_015807_110 Hb_031474_030 Hb_031474_030 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030 Hb_094852_010 Hb_094852_010 Hb_065858_010--Hb_094852_010 Hb_178654_020 Hb_178654_020 Hb_065858_010--Hb_178654_020 Hb_124621_010 Hb_124621_010 Hb_065858_010--Hb_124621_010 Hb_156924_020 Hb_156924_020 Hb_065858_010--Hb_156924_020 Hb_000757_090 Hb_000757_090 Hb_065858_010--Hb_000757_090 Hb_004883_010 Hb_004883_010 Hb_001936_170--Hb_004883_010 Hb_001959_250 Hb_001959_250 Hb_001936_170--Hb_001959_250 Hb_002081_170 Hb_002081_170 Hb_001936_170--Hb_002081_170 Hb_000431_120 Hb_000431_120 Hb_001936_170--Hb_000431_120 Hb_006452_230 Hb_006452_230 Hb_001936_170--Hb_006452_230 Hb_006351_070 Hb_006351_070 Hb_000449_060--Hb_006351_070 Hb_000258_100 Hb_000258_100 Hb_000449_060--Hb_000258_100 Hb_000449_060--Hb_065858_010 Hb_003001_100 Hb_003001_100 Hb_000449_060--Hb_003001_100 Hb_000449_060--Hb_178654_020 Hb_100485_010 Hb_100485_010 Hb_015807_110--Hb_100485_010 Hb_015807_110--Hb_006351_070 Hb_053373_010 Hb_053373_010 Hb_015807_110--Hb_053373_010 Hb_009038_010 Hb_009038_010 Hb_015807_110--Hb_009038_010 Hb_128524_010 Hb_128524_010 Hb_015807_110--Hb_128524_010 Hb_031474_030--Hb_011724_030 Hb_031474_030--Hb_124621_010 Hb_027751_010 Hb_027751_010 Hb_031474_030--Hb_027751_010 Hb_107221_010 Hb_107221_010 Hb_031474_030--Hb_107221_010 Hb_031474_030--Hb_065858_010 Hb_062785_010 Hb_062785_010 Hb_011724_030--Hb_062785_010 Hb_002094_070 Hb_002094_070 Hb_011724_030--Hb_002094_070 Hb_002217_520 Hb_002217_520 Hb_011724_030--Hb_002217_520 Hb_001117_120 Hb_001117_120 Hb_011724_030--Hb_001117_120 Hb_000331_520 Hb_000331_520 Hb_011724_030--Hb_000331_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0303798 0.037528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.463494 0.0728617 0 0 0.142264

CAGE analysis