Hb_100485_010

Information

Type -
Description -
Location Contig100485: 84-458
Sequence    

Annotation

kegg
ID rcu:RCOM_1599560
description tetracycline transporter, putative
nr
ID XP_012073718.1
description PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R8F8
description Tetracycline transporter, putative OS=Ricinus communis GN=RCOM_1599560 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100485_010 0.0 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
2 Hb_015807_110 0.2622195643 - - thioredoxin h [Hevea brasiliensis]
3 Hb_003144_050 0.3132118173 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
4 Hb_002888_010 0.3165179614 - - -
5 Hb_111039_010 0.3267874928 - - -
6 Hb_148209_060 0.3312700093 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
7 Hb_088538_010 0.3349319998 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
8 Hb_000130_030 0.3474764251 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
9 Hb_163472_010 0.3507336403 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_001158_190 0.3523381048 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_000120_360 0.3560460589 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010174_010 0.372711198 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
13 Hb_021888_070 0.3748576472 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
14 Hb_053373_010 0.3749950541 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
15 Hb_002918_040 0.3750059841 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_153051_010 0.3759367393 - - -
17 Hb_025964_050 0.377218243 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
18 Hb_171469_010 0.3806742474 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
19 Hb_007305_030 0.3834644377 - - serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_004218_210 0.3844222829 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]

Gene co-expression network

sample Hb_100485_010 Hb_100485_010 Hb_015807_110 Hb_015807_110 Hb_100485_010--Hb_015807_110 Hb_003144_050 Hb_003144_050 Hb_100485_010--Hb_003144_050 Hb_002888_010 Hb_002888_010 Hb_100485_010--Hb_002888_010 Hb_111039_010 Hb_111039_010 Hb_100485_010--Hb_111039_010 Hb_148209_060 Hb_148209_060 Hb_100485_010--Hb_148209_060 Hb_088538_010 Hb_088538_010 Hb_100485_010--Hb_088538_010 Hb_006351_070 Hb_006351_070 Hb_015807_110--Hb_006351_070 Hb_053373_010 Hb_053373_010 Hb_015807_110--Hb_053373_010 Hb_009038_010 Hb_009038_010 Hb_015807_110--Hb_009038_010 Hb_128524_010 Hb_128524_010 Hb_015807_110--Hb_128524_010 Hb_005615_060 Hb_005615_060 Hb_015807_110--Hb_005615_060 Hb_173281_010 Hb_173281_010 Hb_003144_050--Hb_173281_010 Hb_003144_050--Hb_148209_060 Hb_000130_030 Hb_000130_030 Hb_003144_050--Hb_000130_030 Hb_003144_050--Hb_088538_010 Hb_003286_020 Hb_003286_020 Hb_003144_050--Hb_003286_020 Hb_104000_010 Hb_104000_010 Hb_003144_050--Hb_104000_010 Hb_000608_460 Hb_000608_460 Hb_002888_010--Hb_000608_460 Hb_014568_020 Hb_014568_020 Hb_002888_010--Hb_014568_020 Hb_162633_010 Hb_162633_010 Hb_002888_010--Hb_162633_010 Hb_000310_070 Hb_000310_070 Hb_002888_010--Hb_000310_070 Hb_002888_010--Hb_148209_060 Hb_002888_010--Hb_003144_050 Hb_017134_010 Hb_017134_010 Hb_111039_010--Hb_017134_010 Hb_161785_010 Hb_161785_010 Hb_111039_010--Hb_161785_010 Hb_000749_240 Hb_000749_240 Hb_111039_010--Hb_000749_240 Hb_001158_190 Hb_001158_190 Hb_111039_010--Hb_001158_190 Hb_001902_120 Hb_001902_120 Hb_111039_010--Hb_001902_120 Hb_000720_190 Hb_000720_190 Hb_111039_010--Hb_000720_190 Hb_148209_060--Hb_088538_010 Hb_000545_170 Hb_000545_170 Hb_148209_060--Hb_000545_170 Hb_003913_140 Hb_003913_140 Hb_148209_060--Hb_003913_140 Hb_148209_060--Hb_001902_120 Hb_002045_200 Hb_002045_200 Hb_148209_060--Hb_002045_200 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_088538_010--Hb_002045_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.75636 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.49056 1.21429 2.62103 0 1.34279

CAGE analysis