Hb_161785_010

Information

Type -
Description -
Location Contig161785: 2179-3081
Sequence    

Annotation

kegg
ID bvg:104906236
description uncharacterized LOC104906236
nr
ID XP_012466484.1
description PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID Q7XYF1
description Protease (Fragment) OS=Gossypium hirsutum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161785_010 0.0 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
2 Hb_111039_010 0.2103506956 - - -
3 Hb_017134_010 0.248968303 - - HEV1.2 [Hevea brasiliensis]
4 Hb_004291_010 0.250974291 - - (R)-limonene synthase, putative [Ricinus communis]
5 Hb_001300_260 0.2823224214 - - -
6 Hb_000676_270 0.2861503799 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
7 Hb_001863_440 0.2878943567 - - Nodulin-26, putative [Ricinus communis]
8 Hb_089160_010 0.291977586 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
9 Hb_000802_120 0.2939574722 - - -
10 Hb_001158_190 0.2979996106 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_007305_030 0.2983396711 - - serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_000369_020 0.3032531255 - - PREDICTED: probable fructokinase-7 [Jatropha curcas]
13 Hb_013766_010 0.3120056134 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
14 Hb_003052_220 0.3135536072 - - -
15 Hb_001449_050 0.3150005908 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001951_250 0.3152229606 - - -
17 Hb_002046_070 0.3160086992 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
18 Hb_001619_080 0.3184202293 - - conserved hypothetical protein [Ricinus communis]
19 Hb_014613_010 0.3188222271 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_003159_090 0.3233480092 - - -

Gene co-expression network

sample Hb_161785_010 Hb_161785_010 Hb_111039_010 Hb_111039_010 Hb_161785_010--Hb_111039_010 Hb_017134_010 Hb_017134_010 Hb_161785_010--Hb_017134_010 Hb_004291_010 Hb_004291_010 Hb_161785_010--Hb_004291_010 Hb_001300_260 Hb_001300_260 Hb_161785_010--Hb_001300_260 Hb_000676_270 Hb_000676_270 Hb_161785_010--Hb_000676_270 Hb_001863_440 Hb_001863_440 Hb_161785_010--Hb_001863_440 Hb_111039_010--Hb_017134_010 Hb_000749_240 Hb_000749_240 Hb_111039_010--Hb_000749_240 Hb_001158_190 Hb_001158_190 Hb_111039_010--Hb_001158_190 Hb_001902_120 Hb_001902_120 Hb_111039_010--Hb_001902_120 Hb_000720_190 Hb_000720_190 Hb_111039_010--Hb_000720_190 Hb_017134_010--Hb_000749_240 Hb_017134_010--Hb_004291_010 Hb_001579_140 Hb_001579_140 Hb_017134_010--Hb_001579_140 Hb_108528_010 Hb_108528_010 Hb_017134_010--Hb_108528_010 Hb_000115_050 Hb_000115_050 Hb_017134_010--Hb_000115_050 Hb_004291_010--Hb_001579_140 Hb_004064_020 Hb_004064_020 Hb_004291_010--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_004291_010--Hb_002151_050 Hb_003913_080 Hb_003913_080 Hb_004291_010--Hb_003913_080 Hb_012239_100 Hb_012239_100 Hb_004291_010--Hb_012239_100 Hb_000920_370 Hb_000920_370 Hb_001300_260--Hb_000920_370 Hb_007305_030 Hb_007305_030 Hb_001300_260--Hb_007305_030 Hb_001449_050 Hb_001449_050 Hb_001300_260--Hb_001449_050 Hb_001300_260--Hb_001158_190 Hb_032264_090 Hb_032264_090 Hb_001300_260--Hb_032264_090 Hb_000802_110 Hb_000802_110 Hb_000676_270--Hb_000802_110 Hb_000672_150 Hb_000672_150 Hb_000676_270--Hb_000672_150 Hb_002660_060 Hb_002660_060 Hb_000676_270--Hb_002660_060 Hb_168707_040 Hb_168707_040 Hb_000676_270--Hb_168707_040 Hb_000343_180 Hb_000343_180 Hb_000676_270--Hb_000343_180 Hb_005048_050 Hb_005048_050 Hb_000676_270--Hb_005048_050 Hb_089160_010 Hb_089160_010 Hb_001863_440--Hb_089160_010 Hb_008864_070 Hb_008864_070 Hb_001863_440--Hb_008864_070 Hb_001894_090 Hb_001894_090 Hb_001863_440--Hb_001894_090 Hb_001863_440--Hb_001449_050 Hb_006502_050 Hb_006502_050 Hb_001863_440--Hb_006502_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0582625 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0663853 0.0521995 0.0945301 0.0211193 0

CAGE analysis