Hb_089160_010

Information

Type -
Description -
Location Contig89160: 27-610
Sequence    

Annotation

kegg
ID pmum:103322015
description uncharacterized LOC103322015
nr
ID XP_012477576.1
description PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EEQ6
description CCHC-type integrase OS=Theobroma cacao GN=TCM_017559 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cchc-type integrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089160_010 0.0 - - PREDICTED: uncharacterized protein LOC105793196 [Gossypium raimondii]
2 Hb_001863_440 0.2209138869 - - Nodulin-26, putative [Ricinus communis]
3 Hb_001449_050 0.2552964672 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002007_190 0.2696428248 - - hypothetical protein RCOM_1432220 [Ricinus communis]
5 Hb_009974_030 0.2811741199 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
6 Hb_161785_010 0.291977586 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
7 Hb_000130_230 0.2957121808 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
8 Hb_000120_580 0.2985320505 - - hypothetical protein POPTR_0007s08570g [Populus trichocarpa]
9 Hb_012052_070 0.302104265 - - PREDICTED: uncharacterized protein LOC105635597 [Jatropha curcas]
10 Hb_001951_250 0.3039263183 - - -
11 Hb_001364_030 0.3039407464 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
12 Hb_087596_010 0.3043087817 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
13 Hb_000039_170 0.3122512782 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
14 Hb_004296_020 0.3131383405 - - unnamed protein product [Coffea canephora]
15 Hb_005701_030 0.3151499457 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003060_040 0.3176272763 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
17 Hb_026687_010 0.3242849119 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
18 Hb_003847_020 0.3255816926 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
19 Hb_001619_080 0.3266451793 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000371_070 0.3308998777 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]

Gene co-expression network

sample Hb_089160_010 Hb_089160_010 Hb_001863_440 Hb_001863_440 Hb_089160_010--Hb_001863_440 Hb_001449_050 Hb_001449_050 Hb_089160_010--Hb_001449_050 Hb_002007_190 Hb_002007_190 Hb_089160_010--Hb_002007_190 Hb_009974_030 Hb_009974_030 Hb_089160_010--Hb_009974_030 Hb_161785_010 Hb_161785_010 Hb_089160_010--Hb_161785_010 Hb_000130_230 Hb_000130_230 Hb_089160_010--Hb_000130_230 Hb_008864_070 Hb_008864_070 Hb_001863_440--Hb_008864_070 Hb_001894_090 Hb_001894_090 Hb_001863_440--Hb_001894_090 Hb_001863_440--Hb_001449_050 Hb_006502_050 Hb_006502_050 Hb_001863_440--Hb_006502_050 Hb_001863_440--Hb_161785_010 Hb_000343_180 Hb_000343_180 Hb_001449_050--Hb_000343_180 Hb_012052_070 Hb_012052_070 Hb_001449_050--Hb_012052_070 Hb_005147_010 Hb_005147_010 Hb_001449_050--Hb_005147_010 Hb_140049_010 Hb_140049_010 Hb_001449_050--Hb_140049_010 Hb_023344_080 Hb_023344_080 Hb_001449_050--Hb_023344_080 Hb_007645_080 Hb_007645_080 Hb_002007_190--Hb_007645_080 Hb_001364_030 Hb_001364_030 Hb_002007_190--Hb_001364_030 Hb_000260_310 Hb_000260_310 Hb_002007_190--Hb_000260_310 Hb_001373_180 Hb_001373_180 Hb_002007_190--Hb_001373_180 Hb_000349_290 Hb_000349_290 Hb_002007_190--Hb_000349_290 Hb_000574_350 Hb_000574_350 Hb_002007_190--Hb_000574_350 Hb_014497_110 Hb_014497_110 Hb_009974_030--Hb_014497_110 Hb_000120_580 Hb_000120_580 Hb_009974_030--Hb_000120_580 Hb_001052_030 Hb_001052_030 Hb_009974_030--Hb_001052_030 Hb_000261_450 Hb_000261_450 Hb_009974_030--Hb_000261_450 Hb_016604_020 Hb_016604_020 Hb_009974_030--Hb_016604_020 Hb_003060_030 Hb_003060_030 Hb_009974_030--Hb_003060_030 Hb_111039_010 Hb_111039_010 Hb_161785_010--Hb_111039_010 Hb_017134_010 Hb_017134_010 Hb_161785_010--Hb_017134_010 Hb_004291_010 Hb_004291_010 Hb_161785_010--Hb_004291_010 Hb_001300_260 Hb_001300_260 Hb_161785_010--Hb_001300_260 Hb_000676_270 Hb_000676_270 Hb_161785_010--Hb_000676_270 Hb_001951_250 Hb_001951_250 Hb_000130_230--Hb_001951_250 Hb_003777_360 Hb_003777_360 Hb_000130_230--Hb_003777_360 Hb_003891_080 Hb_003891_080 Hb_000130_230--Hb_003891_080 Hb_001477_150 Hb_001477_150 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000892_070 Hb_000892_070 Hb_000130_230--Hb_000892_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.139101 0 0 0 0.0691313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105147 0.247895 0.14393 0.0339433 0

CAGE analysis