Hb_000120_580

Information

Type -
Description -
Location Contig120: 440896-443062
Sequence    

Annotation

kegg
ID pop:POPTR_0007s08570g
description POPTRDRAFT_562902; hypothetical protein
nr
ID XP_002310696.2
description hypothetical protein POPTR_0007s08570g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HH23
description MLO-like protein OS=Populus trichocarpa GN=MLO PE=3 SV=2
Gene Ontology
ID GO:0016021
description mlo protein homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_580 0.0 - - hypothetical protein POPTR_0007s08570g [Populus trichocarpa]
2 Hb_001153_200 0.1466476035 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
3 Hb_009974_030 0.1634185637 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
4 Hb_001278_050 0.1733759974 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
5 Hb_001143_090 0.1746032845 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
6 Hb_001329_210 0.1760097791 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_001012_040 0.1852140054 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
8 Hb_002392_040 0.1877491636 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002014_160 0.1916855097 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
10 Hb_000156_100 0.1927165894 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
11 Hb_000733_030 0.1928533106 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
12 Hb_000836_080 0.1954947401 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
13 Hb_001473_120 0.1960645146 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_001723_080 0.1964215922 - - hypothetical protein L484_026139 [Morus notabilis]
15 Hb_007666_020 0.1976666076 - - alkaline phytoceramidase, putative [Ricinus communis]
16 Hb_003216_100 0.1985815227 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
17 Hb_001587_020 0.1995102596 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
18 Hb_000350_090 0.2006828111 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
19 Hb_000363_010 0.2012947575 - - -
20 Hb_000567_170 0.2022591128 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_580 Hb_000120_580 Hb_001153_200 Hb_001153_200 Hb_000120_580--Hb_001153_200 Hb_009974_030 Hb_009974_030 Hb_000120_580--Hb_009974_030 Hb_001278_050 Hb_001278_050 Hb_000120_580--Hb_001278_050 Hb_001143_090 Hb_001143_090 Hb_000120_580--Hb_001143_090 Hb_001329_210 Hb_001329_210 Hb_000120_580--Hb_001329_210 Hb_001012_040 Hb_001012_040 Hb_000120_580--Hb_001012_040 Hb_005618_040 Hb_005618_040 Hb_001153_200--Hb_005618_040 Hb_007666_020 Hb_007666_020 Hb_001153_200--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_001153_200--Hb_025087_010 Hb_009026_050 Hb_009026_050 Hb_001153_200--Hb_009026_050 Hb_002471_160 Hb_002471_160 Hb_001153_200--Hb_002471_160 Hb_000934_030 Hb_000934_030 Hb_001153_200--Hb_000934_030 Hb_014497_110 Hb_014497_110 Hb_009974_030--Hb_014497_110 Hb_001052_030 Hb_001052_030 Hb_009974_030--Hb_001052_030 Hb_000261_450 Hb_000261_450 Hb_009974_030--Hb_000261_450 Hb_016604_020 Hb_016604_020 Hb_009974_030--Hb_016604_020 Hb_003060_030 Hb_003060_030 Hb_009974_030--Hb_003060_030 Hb_001278_050--Hb_001329_210 Hb_002078_460 Hb_002078_460 Hb_001278_050--Hb_002078_460 Hb_002936_050 Hb_002936_050 Hb_001278_050--Hb_002936_050 Hb_000032_220 Hb_000032_220 Hb_001278_050--Hb_000032_220 Hb_001278_050--Hb_007666_020 Hb_002897_060 Hb_002897_060 Hb_001278_050--Hb_002897_060 Hb_000749_250 Hb_000749_250 Hb_001143_090--Hb_000749_250 Hb_004453_140 Hb_004453_140 Hb_001143_090--Hb_004453_140 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001143_090--Hb_001278_050 Hb_003943_030 Hb_003943_030 Hb_001143_090--Hb_003943_030 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_002540_030 Hb_002540_030 Hb_001329_210--Hb_002540_030 Hb_001329_210--Hb_007666_020 Hb_001723_080 Hb_001723_080 Hb_001012_040--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001012_040--Hb_000454_110 Hb_012395_210 Hb_012395_210 Hb_001012_040--Hb_012395_210 Hb_004206_030 Hb_004206_030 Hb_001012_040--Hb_004206_030 Hb_005539_210 Hb_005539_210 Hb_001012_040--Hb_005539_210 Hb_001213_120 Hb_001213_120 Hb_001012_040--Hb_001213_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0606434 0.195305 0.015977 0.0313846 0.178472 0.285361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.601141 0.618312 0.538062 0.0730083 0

CAGE analysis