Hb_009974_030

Information

Type -
Description -
Location Contig9974: 11291-14996
Sequence    

Annotation

kegg
ID rcu:RCOM_0611160
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089399.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
swissprot
ID Q94JX6
description Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2
trembl
ID A0A067JLU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23591 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009974_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
2 Hb_014497_110 0.1605378654 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
3 Hb_000120_580 0.1634185637 - - hypothetical protein POPTR_0007s08570g [Populus trichocarpa]
4 Hb_001052_030 0.1712064294 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
5 Hb_000261_450 0.1899339773 - - Pectinesterase U1 precursor, putative [Ricinus communis]
6 Hb_016604_020 0.1944334937 - - -
7 Hb_003060_030 0.1950797658 - - conserved hypothetical protein 16 [Hevea brasiliensis]
8 Hb_148850_010 0.1956660622 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
9 Hb_002260_090 0.1959761506 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
10 Hb_000260_310 0.1963678641 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
11 Hb_000175_130 0.1978067857 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
12 Hb_001012_040 0.1980621562 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]
13 Hb_009486_190 0.1995198422 - - ATP binding protein, putative [Ricinus communis]
14 Hb_004129_150 0.1998636996 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
15 Hb_002326_180 0.200763363 - - Protein Z, putative [Ricinus communis]
16 Hb_034585_050 0.2024536746 - - -
17 Hb_001213_120 0.2024961569 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
18 Hb_001143_090 0.2043141073 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
19 Hb_003095_070 0.2052338552 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
20 Hb_012366_020 0.2055702089 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_009974_030 Hb_009974_030 Hb_014497_110 Hb_014497_110 Hb_009974_030--Hb_014497_110 Hb_000120_580 Hb_000120_580 Hb_009974_030--Hb_000120_580 Hb_001052_030 Hb_001052_030 Hb_009974_030--Hb_001052_030 Hb_000261_450 Hb_000261_450 Hb_009974_030--Hb_000261_450 Hb_016604_020 Hb_016604_020 Hb_009974_030--Hb_016604_020 Hb_003060_030 Hb_003060_030 Hb_009974_030--Hb_003060_030 Hb_002260_090 Hb_002260_090 Hb_014497_110--Hb_002260_090 Hb_001213_120 Hb_001213_120 Hb_014497_110--Hb_001213_120 Hb_012366_020 Hb_012366_020 Hb_014497_110--Hb_012366_020 Hb_001012_040 Hb_001012_040 Hb_014497_110--Hb_001012_040 Hb_002983_030 Hb_002983_030 Hb_014497_110--Hb_002983_030 Hb_003052_040 Hb_003052_040 Hb_014497_110--Hb_003052_040 Hb_001153_200 Hb_001153_200 Hb_000120_580--Hb_001153_200 Hb_001278_050 Hb_001278_050 Hb_000120_580--Hb_001278_050 Hb_001143_090 Hb_001143_090 Hb_000120_580--Hb_001143_090 Hb_001329_210 Hb_001329_210 Hb_000120_580--Hb_001329_210 Hb_000120_580--Hb_001012_040 Hb_146225_010 Hb_146225_010 Hb_001052_030--Hb_146225_010 Hb_002045_230 Hb_002045_230 Hb_001052_030--Hb_002045_230 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_005841_050 Hb_005841_050 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_000123_160 Hb_000123_160 Hb_001052_030--Hb_000123_160 Hb_001511_140 Hb_001511_140 Hb_000261_450--Hb_001511_140 Hb_003095_070 Hb_003095_070 Hb_000261_450--Hb_003095_070 Hb_000788_080 Hb_000788_080 Hb_000261_450--Hb_000788_080 Hb_002450_070 Hb_002450_070 Hb_000261_450--Hb_002450_070 Hb_001258_140 Hb_001258_140 Hb_000261_450--Hb_001258_140 Hb_000281_230 Hb_000281_230 Hb_000261_450--Hb_000281_230 Hb_002053_060 Hb_002053_060 Hb_016604_020--Hb_002053_060 Hb_002609_280 Hb_002609_280 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_003992_080 Hb_003992_080 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_003060_030--Hb_002983_030 Hb_004297_040 Hb_004297_040 Hb_003060_030--Hb_004297_040 Hb_004453_140 Hb_004453_140 Hb_003060_030--Hb_004453_140 Hb_005908_040 Hb_005908_040 Hb_003060_030--Hb_005908_040 Hb_000078_010 Hb_000078_010 Hb_003060_030--Hb_000078_010 Hb_012395_210 Hb_012395_210 Hb_003060_030--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104042 0.159942 0 0.0190744 0.0881244 0.132031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35668 0.724926 0.484064 0.0279866 0

CAGE analysis