Hb_111039_010

Information

Type -
Description -
Location Contig111039: 117-488
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111039_010 0.0 - - -
2 Hb_017134_010 0.1432230352 - - HEV1.2 [Hevea brasiliensis]
3 Hb_161785_010 0.2103506956 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
4 Hb_000749_240 0.2179286579 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001158_190 0.2338742984 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
6 Hb_001902_120 0.2366316206 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
7 Hb_000720_190 0.2368324987 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_108528_010 0.2384431317 - - unnamed protein product [Coffea canephora]
9 Hb_179520_010 0.2416531362 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
10 Hb_001579_140 0.2418218009 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
11 Hb_002045_200 0.2473579564 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
12 Hb_004291_010 0.249353077 - - (R)-limonene synthase, putative [Ricinus communis]
13 Hb_003052_210 0.2630732182 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000115_050 0.2651980866 - - -
15 Hb_088538_010 0.2669456626 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
16 Hb_010174_010 0.268380615 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
17 Hb_002326_170 0.2717706381 - - Protein Z, putative [Ricinus communis]
18 Hb_000371_070 0.27227995 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
19 Hb_001425_050 0.2746172444 - - -
20 Hb_003913_140 0.2772688013 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]

Gene co-expression network

sample Hb_111039_010 Hb_111039_010 Hb_017134_010 Hb_017134_010 Hb_111039_010--Hb_017134_010 Hb_161785_010 Hb_161785_010 Hb_111039_010--Hb_161785_010 Hb_000749_240 Hb_000749_240 Hb_111039_010--Hb_000749_240 Hb_001158_190 Hb_001158_190 Hb_111039_010--Hb_001158_190 Hb_001902_120 Hb_001902_120 Hb_111039_010--Hb_001902_120 Hb_000720_190 Hb_000720_190 Hb_111039_010--Hb_000720_190 Hb_017134_010--Hb_000749_240 Hb_004291_010 Hb_004291_010 Hb_017134_010--Hb_004291_010 Hb_001579_140 Hb_001579_140 Hb_017134_010--Hb_001579_140 Hb_108528_010 Hb_108528_010 Hb_017134_010--Hb_108528_010 Hb_000115_050 Hb_000115_050 Hb_017134_010--Hb_000115_050 Hb_161785_010--Hb_017134_010 Hb_161785_010--Hb_004291_010 Hb_001300_260 Hb_001300_260 Hb_161785_010--Hb_001300_260 Hb_000676_270 Hb_000676_270 Hb_161785_010--Hb_000676_270 Hb_001863_440 Hb_001863_440 Hb_161785_010--Hb_001863_440 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_000749_240--Hb_000115_050 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_000749_240--Hb_001579_140 Hb_000749_240--Hb_001158_190 Hb_010931_050 Hb_010931_050 Hb_001158_190--Hb_010931_050 Hb_001511_140 Hb_001511_140 Hb_001158_190--Hb_001511_140 Hb_088538_010 Hb_088538_010 Hb_001158_190--Hb_088538_010 Hb_000788_080 Hb_000788_080 Hb_001158_190--Hb_000788_080 Hb_000261_450 Hb_000261_450 Hb_001158_190--Hb_000261_450 Hb_002045_200 Hb_002045_200 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_000720_190--Hb_108528_010 Hb_000720_190--Hb_179520_010 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_003052_210 Hb_003052_210 Hb_000720_190--Hb_003052_210 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.482282 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.56957 1.36819 1.62779 0.321843 0

CAGE analysis