Hb_159352_010

Information

Type -
Description -
Location Contig159352: 4797-7072
Sequence    

Annotation

kegg
ID rcu:RCOM_1408070
description glutamate receptor 2 plant, putative
nr
ID KDP31932.1
description hypothetical protein JCGZ_12393 [Jatropha curcas]
swissprot
ID Q93YT1
description Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2
trembl
ID A0A067K744
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_12393 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159352_010 0.0 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
2 Hb_027346_020 0.0898133481 - - -
3 Hb_023051_020 0.1604592826 - - -
4 Hb_000720_190 0.1814527456 - - unknown [Populus trichocarpa x Populus deltoides]
5 Hb_001373_100 0.1830961973 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003226_240 0.1921780617 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_105602_020 0.1929118269 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
8 Hb_002989_040 0.1957840805 - - hypothetical protein 1 [Hevea brasiliensis]
9 Hb_001579_140 0.201539406 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
10 Hb_000920_320 0.2056022173 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
11 Hb_113635_010 0.2121673137 - - -
12 Hb_001276_060 0.2123133043 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
13 Hb_003913_050 0.2165455306 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_003211_050 0.2171207335 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_000450_020 0.2192080698 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008864_060 0.2195143874 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
17 Hb_002478_020 0.221571715 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
18 Hb_002326_170 0.2216274475 - - Protein Z, putative [Ricinus communis]
19 Hb_000917_010 0.2219730459 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_030 0.2223585869 - - hypothetical protein VITISV_021700 [Vitis vinifera]

Gene co-expression network

sample Hb_159352_010 Hb_159352_010 Hb_027346_020 Hb_027346_020 Hb_159352_010--Hb_027346_020 Hb_023051_020 Hb_023051_020 Hb_159352_010--Hb_023051_020 Hb_000720_190 Hb_000720_190 Hb_159352_010--Hb_000720_190 Hb_001373_100 Hb_001373_100 Hb_159352_010--Hb_001373_100 Hb_003226_240 Hb_003226_240 Hb_159352_010--Hb_003226_240 Hb_105602_020 Hb_105602_020 Hb_159352_010--Hb_105602_020 Hb_027346_020--Hb_000720_190 Hb_008864_060 Hb_008864_060 Hb_027346_020--Hb_008864_060 Hb_000450_020 Hb_000450_020 Hb_027346_020--Hb_000450_020 Hb_001276_060 Hb_001276_060 Hb_027346_020--Hb_001276_060 Hb_002326_170 Hb_002326_170 Hb_027346_020--Hb_002326_170 Hb_002989_040 Hb_002989_040 Hb_023051_020--Hb_002989_040 Hb_023051_020--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_023051_020--Hb_034482_040 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_001425_070 Hb_001425_070 Hb_023051_020--Hb_001425_070 Hb_091433_030 Hb_091433_030 Hb_023051_020--Hb_091433_030 Hb_108528_010 Hb_108528_010 Hb_000720_190--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_000720_190--Hb_179520_010 Hb_003052_210 Hb_003052_210 Hb_000720_190--Hb_003052_210 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_000329_660 Hb_000329_660 Hb_001373_100--Hb_000329_660 Hb_001373_100--Hb_003226_240 Hb_001842_080 Hb_001842_080 Hb_001373_100--Hb_001842_080 Hb_000613_160 Hb_000613_160 Hb_001373_100--Hb_000613_160 Hb_003095_070 Hb_003095_070 Hb_001373_100--Hb_003095_070 Hb_012022_100 Hb_012022_100 Hb_001373_100--Hb_012022_100 Hb_003226_240--Hb_002989_040 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_034482_040 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_000103_030 Hb_000103_030 Hb_105602_020--Hb_000103_030 Hb_105602_020--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_105602_020--Hb_089100_050 Hb_004064_020 Hb_004064_020 Hb_105602_020--Hb_004064_020 Hb_003913_050 Hb_003913_050 Hb_105602_020--Hb_003913_050 Hb_105602_020--Hb_000920_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0191814 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0876991 0.137964 0.0639414 0.0276683 0

CAGE analysis