Hb_108528_010

Information

Type -
Description -
Location Contig108528: 76-407
Sequence    

Annotation

kegg
ID cmo:103498663
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID CDP19152.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9LNG5
description Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1
trembl
ID A0A068VEZ1
description Serine/threonine-protein phosphatase OS=Coffea canephora GN=GSCOC_T00001658001 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_108528_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_179520_010 0.0228842723 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
3 Hb_010174_070 0.1315457185 - - -
4 Hb_000720_190 0.1385814534 - - unknown [Populus trichocarpa x Populus deltoides]
5 Hb_004064_020 0.1545628244 - - hypothetical protein M569_06853, partial [Genlisea aurea]
6 Hb_001902_120 0.1640057138 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
7 Hb_003052_210 0.1749630917 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008516_040 0.1870262181 - - conserved hypothetical protein [Ricinus communis]
9 Hb_017134_010 0.187977921 - - HEV1.2 [Hevea brasiliensis]
10 Hb_001842_130 0.1979895877 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002045_200 0.2116432869 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
12 Hb_105602_020 0.2124083666 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
13 Hb_001425_050 0.2154582667 - - -
14 Hb_000749_240 0.217321527 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000115_050 0.218385863 - - -
16 Hb_003913_140 0.2204297132 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
17 Hb_064885_080 0.2212351712 - - -
18 Hb_027346_020 0.2358190664 - - -
19 Hb_052941_010 0.2367206765 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
20 Hb_005568_010 0.2374229008 - - -

Gene co-expression network

sample Hb_108528_010 Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_108528_010--Hb_000720_190 Hb_004064_020 Hb_004064_020 Hb_108528_010--Hb_004064_020 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_179520_010--Hb_010174_070 Hb_179520_010--Hb_000720_190 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_010174_070--Hb_001902_120 Hb_064885_080 Hb_064885_080 Hb_010174_070--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_010174_070--Hb_001114_340 Hb_010174_070--Hb_004064_020 Hb_027346_020 Hb_027346_020 Hb_000720_190--Hb_027346_020 Hb_000720_190--Hb_003052_210 Hb_159352_010 Hb_159352_010 Hb_000720_190--Hb_159352_010 Hb_001959_260 Hb_001959_260 Hb_000720_190--Hb_001959_260 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_002045_200 Hb_002045_200 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_003052_210--Hb_179520_010 Hb_150818_020 Hb_150818_020 Hb_003052_210--Hb_150818_020 Hb_003052_210--Hb_105602_020 Hb_017134_010 Hb_017134_010 Hb_003052_210--Hb_017134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29377 0.230995 0.344915 0.104401 0

CAGE analysis