Hb_017134_010

Information

Type -
Description -
Location Contig17134: 12829-14314
Sequence    

Annotation

kegg
ID rcu:RCOM_0484460
description Wound-induced protein WIN2 precursor, putative
nr
ID AAO63572.1
description HEV1.2 [Hevea brasiliensis]
swissprot
ID P02877
description Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2
trembl
ID Q6JYQ9
description HEV1.2 OS=Hevea brasiliensis PE=4 SV=1
Gene Ontology
ID GO:0008061
description wound-induced protein win2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16026: 12830-13988 , PASA_asmbl_16027: 12842-13988
cDNA
(Sanger)
(ID:Location)		 006_F24.ab1: 13118-13988 , 009_F14.ab1: 13104-13988 , 009_M08.ab1: 13132-13988 , 009_N13.ab1: 13124-13988 , 009_O16.ab1: 13103-13988 , 011_O15.ab1: 13064-13988 , 014_K21.ab1: 13287-13988 , 021_E19.ab1: 13139-13988 , 023_N22.ab1: 13390-13988 , 027_I02.ab1: 13244-13988 , 031_B21.ab1: 12830-13052 , 036_E19.ab1: 13162-13988 , 036_L11.ab1: 13153-13988 , 036_N20.ab1: 13170-13988 , 037_G21.ab1: 13070-13988 , 053_I18.ab1: 13229-13988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017134_010 0.0 - - HEV1.2 [Hevea brasiliensis]
2 Hb_111039_010 0.1432230352 - - -
3 Hb_000749_240 0.1652170253 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004291_010 0.1715944703 - - (R)-limonene synthase, putative [Ricinus communis]
5 Hb_001579_140 0.1789281713 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
6 Hb_108528_010 0.187977921 - - unnamed protein product [Coffea canephora]
7 Hb_000115_050 0.1886673799 - - -
8 Hb_179520_010 0.1935666084 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
9 Hb_004064_020 0.2001916835 - - hypothetical protein M569_06853, partial [Genlisea aurea]
10 Hb_000720_190 0.2103534318 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_001158_190 0.2138185167 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
12 Hb_003052_210 0.2183021706 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001902_120 0.231466015 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
14 Hb_001425_050 0.2368283557 - - -
15 Hb_105602_020 0.2377267757 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
16 Hb_002045_200 0.2401098287 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
17 Hb_009838_040 0.2416829375 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
18 Hb_012239_100 0.2443472798 - - hypothetical protein VITISV_043897 [Vitis vinifera]
19 Hb_000371_070 0.2457570403 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
20 Hb_005000_160 0.2457777195 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]

Gene co-expression network

sample Hb_017134_010 Hb_017134_010 Hb_111039_010 Hb_111039_010 Hb_017134_010--Hb_111039_010 Hb_000749_240 Hb_000749_240 Hb_017134_010--Hb_000749_240 Hb_004291_010 Hb_004291_010 Hb_017134_010--Hb_004291_010 Hb_001579_140 Hb_001579_140 Hb_017134_010--Hb_001579_140 Hb_108528_010 Hb_108528_010 Hb_017134_010--Hb_108528_010 Hb_000115_050 Hb_000115_050 Hb_017134_010--Hb_000115_050 Hb_161785_010 Hb_161785_010 Hb_111039_010--Hb_161785_010 Hb_111039_010--Hb_000749_240 Hb_001158_190 Hb_001158_190 Hb_111039_010--Hb_001158_190 Hb_001902_120 Hb_001902_120 Hb_111039_010--Hb_001902_120 Hb_000720_190 Hb_000720_190 Hb_111039_010--Hb_000720_190 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_000749_240--Hb_000115_050 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_000749_240--Hb_001579_140 Hb_000749_240--Hb_001158_190 Hb_004291_010--Hb_001579_140 Hb_004064_020 Hb_004064_020 Hb_004291_010--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_004291_010--Hb_002151_050 Hb_003913_080 Hb_003913_080 Hb_004291_010--Hb_003913_080 Hb_012239_100 Hb_012239_100 Hb_004291_010--Hb_012239_100 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_000613_160 Hb_000613_160 Hb_001579_140--Hb_000613_160 Hb_001579_140--Hb_012239_100 Hb_001579_140--Hb_005000_160 Hb_001579_140--Hb_009838_040 Hb_179520_010 Hb_179520_010 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_000115_050--Hb_003913_080 Hb_002067_100 Hb_002067_100 Hb_000115_050--Hb_002067_100 Hb_000115_050--Hb_002151_050 Hb_000115_050--Hb_108528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1097.33 7.82228 316.95 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8007.4 7417.73 7006.01 2004.71 19.5265

CAGE analysis