Hb_003913_080

Information

Type -
Description -
Location Contig3913: 51598-52346
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_001712533.1
description rpl27A [Hemiselmis andersenii]
swissprot
ID A5UL66
description 50S ribosomal protein L15 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl15 PE=3 SV=1
trembl
ID A9BL25
description Rpl27A OS=Hemiselmis andersenii GN=HAN_3g398 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39203: 40694-50666 , PASA_asmbl_39205: 51913-52344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_080 0.0 - - rpl27A [Hemiselmis andersenii]
2 Hb_000161_150 0.1614034612 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
3 Hb_001776_170 0.1772102021 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004064_020 0.1874774879 - - hypothetical protein M569_06853, partial [Genlisea aurea]
5 Hb_002151_050 0.1879444131 - - cytochrome P450, putative [Ricinus communis]
6 Hb_005671_020 0.1899342641 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
7 Hb_000010_410 0.1921560684 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
8 Hb_004208_130 0.1945252897 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
9 Hb_001096_030 0.19461417 - - uridylate kinase plant, putative [Ricinus communis]
10 Hb_008725_040 0.1987232509 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
11 Hb_002374_400 0.2019050485 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
12 Hb_000316_020 0.2028426492 - - protein binding protein, putative [Ricinus communis]
13 Hb_000771_130 0.2036994618 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
14 Hb_062135_020 0.2063334467 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
15 Hb_002067_140 0.2069824617 - - -
16 Hb_000809_030 0.2075777079 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
17 Hb_009314_010 0.2081813516 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_000732_210 0.2088298704 - - hexose transporter 1 [Hevea brasiliensis]
19 Hb_000115_050 0.2096734277 - - -
20 Hb_001369_450 0.2097142974 - - trehalose-6-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003913_080 Hb_003913_080 Hb_000161_150 Hb_000161_150 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_004064_020 Hb_004064_020 Hb_003913_080--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_003913_080--Hb_002151_050 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_009314_010 Hb_009314_010 Hb_000161_150--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000432_050 Hb_000432_050 Hb_000161_150--Hb_000432_050 Hb_002067_140 Hb_002067_140 Hb_001776_170--Hb_002067_140 Hb_001369_600 Hb_001369_600 Hb_001776_170--Hb_001369_600 Hb_012053_050 Hb_012053_050 Hb_001776_170--Hb_012053_050 Hb_001511_140 Hb_001511_140 Hb_001776_170--Hb_001511_140 Hb_002759_240 Hb_002759_240 Hb_001776_170--Hb_002759_240 Hb_000979_250 Hb_000979_250 Hb_001776_170--Hb_000979_250 Hb_108528_010 Hb_108528_010 Hb_004064_020--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_004064_020--Hb_179520_010 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_010174_070 Hb_010174_070 Hb_004064_020--Hb_010174_070 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_012239_100 Hb_012239_100 Hb_002151_050--Hb_012239_100 Hb_002138_010 Hb_002138_010 Hb_002151_050--Hb_002138_010 Hb_036790_020 Hb_036790_020 Hb_002151_050--Hb_036790_020 Hb_000184_230 Hb_000184_230 Hb_002151_050--Hb_000184_230 Hb_145084_010 Hb_145084_010 Hb_002151_050--Hb_145084_010 Hb_003032_100 Hb_003032_100 Hb_005671_020--Hb_003032_100 Hb_001096_030 Hb_001096_030 Hb_005671_020--Hb_001096_030 Hb_005671_020--Hb_000161_150 Hb_000723_190 Hb_000723_190 Hb_005671_020--Hb_000723_190 Hb_005671_020--Hb_000010_410 Hb_001232_140 Hb_001232_140 Hb_005671_020--Hb_001232_140 Hb_001053_150 Hb_001053_150 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_005224_010 Hb_005224_010 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.743602 0.703587 0.381908 2.25204 0.279418 1.02844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.10069 15.4991 16.8451 7.80928 0.338561

CAGE analysis