Hb_000892_070

Information

Type -
Description -
Location Contig892: 93602-98497
Sequence    

Annotation

kegg
ID rcu:RCOM_1528960
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_012065507.1
description PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID A0A067L4M8
description Lipoxygenase OS=Jatropha curcas GN=JCGZ_16708 PE=3 SV=1
Gene Ontology
ID GO:0005515
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61689: 93618-98474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000892_070 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
2 Hb_002725_060 0.2310251374 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
3 Hb_004994_110 0.2313980993 - - -
4 Hb_167711_040 0.2415061238 - - PREDICTED: cucumisin-like [Jatropha curcas]
5 Hb_007757_140 0.2611748139 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_000130_230 0.2634439993 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
7 Hb_001951_250 0.2672133714 - - -
8 Hb_000703_050 0.2720118403 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000756_020 0.2844206259 - - BnaA05g19440D [Brassica napus]
10 Hb_001477_150 0.2870314844 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_001767_050 0.2959076592 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001146_060 0.2960767589 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
13 Hb_001247_330 0.3061001032 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
14 Hb_163268_010 0.307127744 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
15 Hb_001741_130 0.3072331714 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
16 Hb_000249_120 0.3111593608 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
17 Hb_001369_210 0.3191735774 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]
18 Hb_008505_020 0.3196730615 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_033835_020 0.3203745197 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002382_030 0.3209003256 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]

Gene co-expression network

sample Hb_000892_070 Hb_000892_070 Hb_002725_060 Hb_002725_060 Hb_000892_070--Hb_002725_060 Hb_004994_110 Hb_004994_110 Hb_000892_070--Hb_004994_110 Hb_167711_040 Hb_167711_040 Hb_000892_070--Hb_167711_040 Hb_007757_140 Hb_007757_140 Hb_000892_070--Hb_007757_140 Hb_000130_230 Hb_000130_230 Hb_000892_070--Hb_000130_230 Hb_001951_250 Hb_001951_250 Hb_000892_070--Hb_001951_250 Hb_002725_060--Hb_004994_110 Hb_002725_060--Hb_167711_040 Hb_000703_050 Hb_000703_050 Hb_002725_060--Hb_000703_050 Hb_001146_060 Hb_001146_060 Hb_002725_060--Hb_001146_060 Hb_001247_330 Hb_001247_330 Hb_002725_060--Hb_001247_330 Hb_000756_020 Hb_000756_020 Hb_002725_060--Hb_000756_020 Hb_004994_110--Hb_167711_040 Hb_004994_110--Hb_000703_050 Hb_004994_110--Hb_001247_330 Hb_004994_110--Hb_001146_060 Hb_004994_110--Hb_000756_020 Hb_167711_040--Hb_000756_020 Hb_163268_010 Hb_163268_010 Hb_167711_040--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_167711_040--Hb_001741_130 Hb_008505_020 Hb_008505_020 Hb_167711_040--Hb_008505_020 Hb_006586_010 Hb_006586_010 Hb_007757_140--Hb_006586_010 Hb_008438_010 Hb_008438_010 Hb_007757_140--Hb_008438_010 Hb_001477_150 Hb_001477_150 Hb_007757_140--Hb_001477_150 Hb_080749_010 Hb_080749_010 Hb_007757_140--Hb_080749_010 Hb_007757_140--Hb_001951_250 Hb_000130_230--Hb_001951_250 Hb_003777_360 Hb_003777_360 Hb_000130_230--Hb_003777_360 Hb_003891_080 Hb_003891_080 Hb_000130_230--Hb_003891_080 Hb_000130_230--Hb_001477_150 Hb_001767_050 Hb_001767_050 Hb_000130_230--Hb_001767_050 Hb_000371_070 Hb_000371_070 Hb_001951_250--Hb_000371_070 Hb_001951_250--Hb_003777_360 Hb_001951_250--Hb_001477_150 Hb_007426_050 Hb_007426_050 Hb_001951_250--Hb_007426_050 Hb_002067_140 Hb_002067_140 Hb_001951_250--Hb_002067_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00651118 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0352512 0.0224672 0 0

CAGE analysis