Hb_080749_010

Information

Type -
Description -
Location Contig80749: 262-1107
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07460g
description POPTRDRAFT_557689; hypothetical protein
nr
ID XP_011024969.1
description PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HNG4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07460g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080749_010 0.0 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
2 Hb_003020_170 0.2621211721 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
3 Hb_011249_040 0.2661865038 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
4 Hb_003055_150 0.2695204216 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_001477_150 0.2868011202 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_012338_020 0.288325844 - - -
7 Hb_000321_130 0.3106226528 - - Alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_012053_060 0.3200696885 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
9 Hb_094890_010 0.3222246463 - - -
10 Hb_007547_020 0.32626053 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
11 Hb_008438_010 0.3304340539 - - PREDICTED: uncharacterized protein LOC104245771 [Nicotiana sylvestris]
12 Hb_007757_140 0.330893717 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_000538_180 0.3334113896 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
14 Hb_001741_130 0.3358659987 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
15 Hb_163268_010 0.3358678921 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
16 Hb_008505_020 0.3361303667 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_033835_020 0.3361728025 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_005531_010 0.3365484277 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
19 Hb_000756_020 0.3381488307 - - BnaA05g19440D [Brassica napus]
20 Hb_000892_070 0.338693723 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_080749_010 Hb_080749_010 Hb_003020_170 Hb_003020_170 Hb_080749_010--Hb_003020_170 Hb_011249_040 Hb_011249_040 Hb_080749_010--Hb_011249_040 Hb_003055_150 Hb_003055_150 Hb_080749_010--Hb_003055_150 Hb_001477_150 Hb_001477_150 Hb_080749_010--Hb_001477_150 Hb_012338_020 Hb_012338_020 Hb_080749_010--Hb_012338_020 Hb_000321_130 Hb_000321_130 Hb_080749_010--Hb_000321_130 Hb_007426_050 Hb_007426_050 Hb_003020_170--Hb_007426_050 Hb_003020_170--Hb_001477_150 Hb_001369_600 Hb_001369_600 Hb_003020_170--Hb_001369_600 Hb_000117_100 Hb_000117_100 Hb_003020_170--Hb_000117_100 Hb_001488_370 Hb_001488_370 Hb_003020_170--Hb_001488_370 Hb_000589_160 Hb_000589_160 Hb_003020_170--Hb_000589_160 Hb_168925_010 Hb_168925_010 Hb_011249_040--Hb_168925_010 Hb_039229_010 Hb_039229_010 Hb_011249_040--Hb_039229_010 Hb_000264_220 Hb_000264_220 Hb_011249_040--Hb_000264_220 Hb_011249_040--Hb_012338_020 Hb_002240_040 Hb_002240_040 Hb_011249_040--Hb_002240_040 Hb_094890_010 Hb_094890_010 Hb_003055_150--Hb_094890_010 Hb_014720_090 Hb_014720_090 Hb_003055_150--Hb_014720_090 Hb_001141_290 Hb_001141_290 Hb_003055_150--Hb_001141_290 Hb_003055_150--Hb_011249_040 Hb_003055_150--Hb_003020_170 Hb_008438_010 Hb_008438_010 Hb_001477_150--Hb_008438_010 Hb_000943_060 Hb_000943_060 Hb_001477_150--Hb_000943_060 Hb_001951_250 Hb_001951_250 Hb_001477_150--Hb_001951_250 Hb_000130_230 Hb_000130_230 Hb_001477_150--Hb_000130_230 Hb_002046_070 Hb_002046_070 Hb_001477_150--Hb_002046_070 Hb_007547_020 Hb_007547_020 Hb_012338_020--Hb_007547_020 Hb_004324_160 Hb_004324_160 Hb_012338_020--Hb_004324_160 Hb_012338_020--Hb_000321_130 Hb_008505_020 Hb_008505_020 Hb_012338_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_012338_020--Hb_033835_020 Hb_001741_130 Hb_001741_130 Hb_012338_020--Hb_001741_130 Hb_000321_130--Hb_004324_160 Hb_000321_130--Hb_007547_020 Hb_000703_040 Hb_000703_040 Hb_000321_130--Hb_000703_040 Hb_002259_190 Hb_002259_190 Hb_000321_130--Hb_002259_190 Hb_054865_070 Hb_054865_070 Hb_000321_130--Hb_054865_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0308655 0.0294248 0.0368071 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.133016 0.236463 0 0

CAGE analysis