Hb_012338_020

Information

Type -
Description -
Location Contig12338: 58953-62220
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0046872
description hypothetical protein CICLE_v10033628mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012338_020 0.0 - - -
2 Hb_007547_020 0.0981804007 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
3 Hb_004324_160 0.2277341411 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_000321_130 0.2321397718 - - Alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_008505_020 0.2652715461 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
6 Hb_033835_020 0.2652996317 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001741_130 0.2654340915 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
8 Hb_163268_010 0.2654410603 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
9 Hb_005531_010 0.2656020883 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
10 Hb_002240_040 0.2683132802 - - -
11 Hb_000756_020 0.2694620661 - - BnaA05g19440D [Brassica napus]
12 Hb_011249_040 0.2747794259 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
13 Hb_080749_010 0.288325844 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
14 Hb_039229_010 0.292185565 - - -
15 Hb_167711_040 0.2997528033 - - PREDICTED: cucumisin-like [Jatropha curcas]
16 Hb_103604_010 0.3102573085 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_003786_090 0.3294174535 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
18 Hb_005615_050 0.3336951958 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
19 Hb_008790_050 0.3352225553 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000249_120 0.3361715296 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]

Gene co-expression network

sample Hb_012338_020 Hb_012338_020 Hb_007547_020 Hb_007547_020 Hb_012338_020--Hb_007547_020 Hb_004324_160 Hb_004324_160 Hb_012338_020--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_012338_020--Hb_000321_130 Hb_008505_020 Hb_008505_020 Hb_012338_020--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_012338_020--Hb_033835_020 Hb_001741_130 Hb_001741_130 Hb_012338_020--Hb_001741_130 Hb_007547_020--Hb_004324_160 Hb_007547_020--Hb_000321_130 Hb_001008_140 Hb_001008_140 Hb_007547_020--Hb_001008_140 Hb_011249_040 Hb_011249_040 Hb_007547_020--Hb_011249_040 Hb_103604_010 Hb_103604_010 Hb_007547_020--Hb_103604_010 Hb_004324_160--Hb_000321_130 Hb_002259_190 Hb_002259_190 Hb_004324_160--Hb_002259_190 Hb_000703_040 Hb_000703_040 Hb_004324_160--Hb_000703_040 Hb_054865_070 Hb_054865_070 Hb_004324_160--Hb_054865_070 Hb_000321_130--Hb_000703_040 Hb_000321_130--Hb_002259_190 Hb_000321_130--Hb_054865_070 Hb_008505_020--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_008505_020--Hb_005531_010 Hb_008505_020--Hb_001741_130 Hb_163268_010 Hb_163268_010 Hb_008505_020--Hb_163268_010 Hb_002240_040 Hb_002240_040 Hb_008505_020--Hb_002240_040 Hb_000756_020 Hb_000756_020 Hb_008505_020--Hb_000756_020 Hb_033835_020--Hb_005531_010 Hb_033835_020--Hb_001741_130 Hb_033835_020--Hb_163268_010 Hb_033835_020--Hb_002240_040 Hb_033835_020--Hb_000756_020 Hb_001741_130--Hb_163268_010 Hb_001741_130--Hb_005531_010 Hb_001741_130--Hb_000756_020 Hb_001741_130--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0164868 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0375218 0.0692789 0 0

CAGE analysis