Hb_003055_150

Information

Type -
Description -
Location Contig3055: 112043-118264
Sequence    

Annotation

kegg
ID rcu:RCOM_1062290
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002521402.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID O04084
description Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=2
trembl
ID B9S5Y3
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1062290 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003055_150 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_094890_010 0.1615485002 - - -
3 Hb_014720_090 0.2341043376 - - -
4 Hb_080749_010 0.2695204216 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
5 Hb_001141_290 0.2846692088 - - -
6 Hb_011249_040 0.2918882921 - - PREDICTED: acetylajmalan esterase-like [Populus euphratica]
7 Hb_003020_170 0.3150885936 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_000599_320 0.3227659835 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
9 Hb_011081_040 0.3502337358 - - hypothetical protein JCGZ_20956 [Jatropha curcas]
10 Hb_000500_120 0.3530156167 - - PREDICTED: uncharacterized protein LOC105648659 [Jatropha curcas]
11 Hb_000321_130 0.3716049974 - - Alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_009707_030 0.3796436604 - - PREDICTED: ankyrin repeat-containing protein At5g02620 [Jatropha curcas]
13 Hb_012163_020 0.386719981 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
14 Hb_012338_020 0.3884776805 - - -
15 Hb_001310_090 0.3886683787 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
16 Hb_007672_030 0.3893843589 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
17 Hb_000170_120 0.3898719559 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000538_180 0.3909989312 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
19 Hb_002078_170 0.3970849065 - - ELMO/CED-12 domain-containing protein isoform 3 [Theobroma cacao]
20 Hb_011540_030 0.3981399996 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX5-like isoform X6 [Glycine max]

Gene co-expression network

sample Hb_003055_150 Hb_003055_150 Hb_094890_010 Hb_094890_010 Hb_003055_150--Hb_094890_010 Hb_014720_090 Hb_014720_090 Hb_003055_150--Hb_014720_090 Hb_080749_010 Hb_080749_010 Hb_003055_150--Hb_080749_010 Hb_001141_290 Hb_001141_290 Hb_003055_150--Hb_001141_290 Hb_011249_040 Hb_011249_040 Hb_003055_150--Hb_011249_040 Hb_003020_170 Hb_003020_170 Hb_003055_150--Hb_003020_170 Hb_094890_010--Hb_001141_290 Hb_000500_120 Hb_000500_120 Hb_094890_010--Hb_000500_120 Hb_094890_010--Hb_014720_090 Hb_094890_010--Hb_080749_010 Hb_011081_040 Hb_011081_040 Hb_094890_010--Hb_011081_040 Hb_014720_090--Hb_001141_290 Hb_007672_030 Hb_007672_030 Hb_014720_090--Hb_007672_030 Hb_163206_010 Hb_163206_010 Hb_014720_090--Hb_163206_010 Hb_000866_250 Hb_000866_250 Hb_014720_090--Hb_000866_250 Hb_080749_010--Hb_003020_170 Hb_080749_010--Hb_011249_040 Hb_001477_150 Hb_001477_150 Hb_080749_010--Hb_001477_150 Hb_012338_020 Hb_012338_020 Hb_080749_010--Hb_012338_020 Hb_000321_130 Hb_000321_130 Hb_080749_010--Hb_000321_130 Hb_001141_290--Hb_000866_250 Hb_001141_290--Hb_011081_040 Hb_001080_010 Hb_001080_010 Hb_001141_290--Hb_001080_010 Hb_168925_010 Hb_168925_010 Hb_011249_040--Hb_168925_010 Hb_039229_010 Hb_039229_010 Hb_011249_040--Hb_039229_010 Hb_000264_220 Hb_000264_220 Hb_011249_040--Hb_000264_220 Hb_011249_040--Hb_012338_020 Hb_002240_040 Hb_002240_040 Hb_011249_040--Hb_002240_040 Hb_007426_050 Hb_007426_050 Hb_003020_170--Hb_007426_050 Hb_003020_170--Hb_001477_150 Hb_001369_600 Hb_001369_600 Hb_003020_170--Hb_001369_600 Hb_000117_100 Hb_000117_100 Hb_003020_170--Hb_000117_100 Hb_001488_370 Hb_001488_370 Hb_003020_170--Hb_001488_370 Hb_000589_160 Hb_000589_160 Hb_003020_170--Hb_000589_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00916561 0.0476908 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0441577 0.0832446 0 0

CAGE analysis