Hb_000371_070

Information

Type -
Description -
Location Contig371: 134719-135703
Sequence    

Annotation

kegg
ID brp:103863319
description uncharacterized LOC103863319
nr
ID XP_009139324.1
description PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
swissprot
ID -
description -
trembl
ID K4A0B9
description Uncharacterized protein OS=Setaria italica GN=Si032308m.g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000371_070 0.0 - - PREDICTED: uncharacterized protein LOC103863319 [Brassica rapa]
2 Hb_001433_100 0.1889661962 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
3 Hb_008066_030 0.1952819066 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
4 Hb_003060_040 0.2103252995 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
5 Hb_001579_140 0.2161666284 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
6 Hb_034482_040 0.2227025917 - - aspartate kinase, partial [Francisella tularensis]
7 Hb_001951_250 0.2286043059 - - -
8 Hb_000979_250 0.2305558246 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003226_240 0.2326028262 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
10 Hb_000792_120 0.2419511788 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
11 Hb_156850_060 0.2425447236 - - PREDICTED: uncharacterized protein LOC105635248 [Jatropha curcas]
12 Hb_017134_010 0.2457570403 - - HEV1.2 [Hevea brasiliensis]
13 Hb_000300_210 0.246303239 - - gd2b, putative [Ricinus communis]
14 Hb_002989_040 0.2492203974 - - hypothetical protein 1 [Hevea brasiliensis]
15 Hb_002478_020 0.2504191235 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
16 Hb_023051_020 0.2509914332 - - -
17 Hb_001425_070 0.2520379374 - - -
18 Hb_000920_320 0.2530688613 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
19 Hb_009974_020 0.2547810455 - - PREDICTED: uncharacterized protein LOC104427753 [Eucalyptus grandis]
20 Hb_000103_030 0.254913085 - - hypothetical protein VITISV_021700 [Vitis vinifera]

Gene co-expression network

sample Hb_000371_070 Hb_000371_070 Hb_001433_100 Hb_001433_100 Hb_000371_070--Hb_001433_100 Hb_008066_030 Hb_008066_030 Hb_000371_070--Hb_008066_030 Hb_003060_040 Hb_003060_040 Hb_000371_070--Hb_003060_040 Hb_001579_140 Hb_001579_140 Hb_000371_070--Hb_001579_140 Hb_034482_040 Hb_034482_040 Hb_000371_070--Hb_034482_040 Hb_001951_250 Hb_001951_250 Hb_000371_070--Hb_001951_250 Hb_003226_240 Hb_003226_240 Hb_001433_100--Hb_003226_240 Hb_001433_100--Hb_034482_040 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_032202_250 Hb_032202_250 Hb_001433_100--Hb_032202_250 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_000979_250 Hb_000979_250 Hb_008066_030--Hb_000979_250 Hb_003198_010 Hb_003198_010 Hb_008066_030--Hb_003198_010 Hb_004567_020 Hb_004567_020 Hb_008066_030--Hb_004567_020 Hb_000792_120 Hb_000792_120 Hb_008066_030--Hb_000792_120 Hb_008066_030--Hb_000300_210 Hb_000920_320 Hb_000920_320 Hb_003060_040--Hb_000920_320 Hb_091433_030 Hb_091433_030 Hb_003060_040--Hb_091433_030 Hb_000270_620 Hb_000270_620 Hb_003060_040--Hb_000270_620 Hb_003060_040--Hb_001433_100 Hb_003060_040--Hb_003226_240 Hb_003913_050 Hb_003913_050 Hb_003060_040--Hb_003913_050 Hb_001579_140--Hb_000792_120 Hb_000613_160 Hb_000613_160 Hb_001579_140--Hb_000613_160 Hb_012239_100 Hb_012239_100 Hb_001579_140--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_001579_140--Hb_005000_160 Hb_009838_040 Hb_009838_040 Hb_001579_140--Hb_009838_040 Hb_000749_240 Hb_000749_240 Hb_001579_140--Hb_000749_240 Hb_002989_040 Hb_002989_040 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_003226_240 Hb_023051_020 Hb_023051_020 Hb_034482_040--Hb_023051_020 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_000130_230 Hb_000130_230 Hb_001951_250--Hb_000130_230 Hb_003777_360 Hb_003777_360 Hb_001951_250--Hb_003777_360 Hb_001477_150 Hb_001477_150 Hb_001951_250--Hb_001477_150 Hb_007426_050 Hb_007426_050 Hb_001951_250--Hb_007426_050 Hb_002067_140 Hb_002067_140 Hb_001951_250--Hb_002067_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.105859 0.069193 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.414544 0.760543 0.294318 0.0440043 0

CAGE analysis